Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq5121 107 2e-18 seq5124 102 7e-17 seq5123 84.2 2e-11 >seq5121 Length=18748788 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || |||||||| || | || || |||||||| Sbjct 15142859 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 15142918 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || |||||||||||||| || | | ||||||||| Sbjct 15142919 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 15142978 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| | ||| ||| | || ||||| || Sbjct 15142979 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 15143038 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || |||||||| |||||||| Sbjct 15143039 CCAGTGAGGGTCTTCACAAAGATCTGCAT 15143067 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || |||||||| || | || || |||||||| Sbjct 15143315 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 15143374 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || |||||||||||||| || | | ||||||||| Sbjct 15143375 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 15143434 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| | ||| ||| | || ||||| || Sbjct 15143435 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 15143494 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || |||||||| |||||||| Sbjct 15143495 CCAGTGAGGGTCTTCACAAAGATCTGCAT 15143523 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || |||||||| || | || || |||||||| Sbjct 15143543 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 15143602 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || |||||||||||||| || | | ||||||||| Sbjct 15143603 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 15143662 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| | ||| ||| | || ||||| || Sbjct 15143663 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 15143722 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || |||||||| |||||||| Sbjct 15143723 CCAGTGAGGGTCTTCACAAAGATCTGCAT 15143751 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || |||||||| || | || || |||||||| Sbjct 15142631 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 15142690 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || |||||||||||||| || | | ||||||||| Sbjct 15142691 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 15142750 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| | ||| ||| | || ||||| || Sbjct 15142751 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 15142810 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || |||||||| |||||||| Sbjct 15142811 CCAGTAAGGGTCTTCACAAAGATCTGCAT 15142839 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || |||||||| || | || || |||||||| Sbjct 15143087 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 15143146 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || |||||||||||||| || | | ||||||||| Sbjct 15143147 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 15143206 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| | ||| ||| | || || || || Sbjct 15143207 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATAGTCTTG 15143266 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || |||||||| |||||||| Sbjct 15143267 CCAGTGAGGGTCTTCACAAAGATCTGCAT 15143295 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || |||||||| || | || || ||||||| Sbjct 15142403 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCCTCT 15142462 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || |||||||||||||| || | | ||||||||| Sbjct 15142463 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 15142522 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| | ||| ||| | || || || || Sbjct 15142523 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATAGTCTTG 15142582 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || |||||||| |||||||| Sbjct 15142583 CCAGTGAGGGTCTTCACAAAGATCTGCAT 15142611 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || |||||||| || | || || |||||||| Sbjct 15143771 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 15143830 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| || | || |||||||||||||| || | | ||||||||| Sbjct 15143831 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 15143890 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || ||||| | | |||||||||| | ||| ||| | || ||||| || Sbjct 15143891 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTG 15143950 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || ||||| || || ||||| ||||| Sbjct 15143951 CCAGTCAGAGTCTTTACGAAAATTTGCAT 15143979 >seq5124 Length=26641161 Score = 102 bits (112), Expect = 7e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || |||| | | ||| || || || || |||||| || |||||||| || | Sbjct 4301719 ACCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 4301660 Query 48559 CA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 || | || || |||||||||||||||| ||| || | || | |||||||||||| | Sbjct 4301659 CAGAGTG-CGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 4301601 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCG 48677 | | | ||||| ||| || || ||||| | | | ||||| || | || |||| Sbjct 4301600 GAATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCA 4301541 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730 ||| | || ||||| || |||||||| |||||||| || || ||||| ||| Sbjct 4301540 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATGGTG 4301488 >seq5123 Length=25762168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTC 48576 || || ||||| || |||||| || ||||| || |||| | | || || | ||||| Sbjct 6599671 ACCAAGTGAAGGGTCGACTCCTTCTGTATGTTATAGTCAGAAAGAGTG-CGTCCATCCTC 6599729 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || |||| | |||||||||||| || | | ||||| ||| Sbjct 6599730 GAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCCTG 6599789 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | |||||||||| || |||| ||| | || ||||| || Sbjct 6599790 AATCTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCACCTCCAAAGTGATGGTCTT 6599849 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||| || |||||||| Sbjct 6599850 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 6599879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421224893389124