Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5122 127 1e-24 seq5124 125 4e-24 seq5121 113 2e-20 >seq5122 Length=22589142 Score = 127 bits (140), Expect = 1e-24 Identities = 81/89 (91%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| ||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 16500161 AAAAAAAAATTCAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 16500102 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 16500101 GACGCTCTAACCAACTGAGCTAATGGGCC 16500073 Score = 123 bits (136), Expect = 1e-23 Identities = 94/110 (85%), Gaps = 4/110 (4%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||| |||| |||||||||| |||||||||| |||||||||||||||||||| Sbjct 9803731 ATAAAAAAAAAAATCATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 9803672 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC--GTCGACGATTGTGATTTT 11547 ||||||||| |||||||||||||||||||| | |||||| | | |||| Sbjct 9803671 CGACGCTCTAACCAACTGAGCTAATGGGCCTTGGTGACGATAGCGCTTTT 9803622 Score = 122 bits (134), Expect = 5e-23 Identities = 82/91 (90%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||||| |||| ||||||||| |||||||||| |||||||||||||||||||| Sbjct 16491799 AAAAAAAAATCTAATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 16491858 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||| |||| |||||||||||||||| Sbjct 16491859 CGACGCTCTAACCAGCTGAGCTAATGGGCCG 16491889 Score = 120 bits (132), Expect = 2e-22 Identities = 88/102 (86%), Gaps = 1/102 (1%) Strand=Plus/Plus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||| ||||| || ||| |||| | ||||||||| |||||||||| |||||||| Sbjct 16497538 GAAATGTAGAAAAAAAAAAGAATCGTGT-GGCCCATGAGGGGATCGAACCCGCGACCTTC 16497596 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||||||||||||||||||| Sbjct 16497597 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 16497638 Score = 116 bits (128), Expect = 2e-21 Identities = 85/98 (87%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||| ||| || || | || | ||||||||||| |||||||||| |||||||||||| Sbjct 16498693 TATA-AATAAAAAATATATACATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGT 16498751 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||||||||||||||||||| Sbjct 16498752 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 16498789 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 16497938 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 16497997 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 16497998 TGAGCTAATGGGCC 16498011 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 16499392 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 16499451 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 16499452 TGAGCTAATGGGCC 16499465 >seq5124 Length=26641161 Score = 125 bits (138), Expect = 4e-24 Identities = 82/90 (91%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||||||| | ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 18589373 AAAAAATCAAGT-GGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAC 18589431 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCGTCG 11533 ||||| |||||||||||||||||||| ||| Sbjct 18589432 GCTCTAACCAACTGAGCTAATGGGCCTTCG 18589461 >seq5121 Length=18748788 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 17632483 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 17632542 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 17632543 TGAGCTAATGGGCC 17632556 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261474870201424