Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5124 237 4e-57 >seq5124 Length=26641161 Score = 237 bits (262), Expect = 4e-57 Identities = 1111/1747 (64%), Gaps = 73/1747 (4%) Strand=Plus/Minus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || || |||||||||||| | ||||| || || || || |||||| | |||| | ||| Sbjct 10934131 GAGCGACCGCAGCATATGCTGATGCGCGTGGCGATCGGAATCCATGGAGAGGATATAGAT 10934072 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACA 363567 || || | ||||| || || |||||| | || || ||||| || |||| || Sbjct 10934071 GCGGCCGTGGAAACCTACAATCTTCTATCGGAGCGCTACTTTACGCATGCATCGCCCACG 10934012 Query 363568 ATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAG 363627 ||| ||||| || || ||| |||| || || || ||||| | |||| Sbjct 10934011 CTGTTTGCTGCTGCCACAAACCGCCCGCAGCTGTCGTCGTGTTTCCTTCTGACCATGACT 10933952 Query 363628 GACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAAT 363687 | ||| || |||||||| || ||| | | | || | || || | || |||||| | Sbjct 10933951 GCCGACTCAATCGAGGGCATTTTTAAGTCTGTGGAGCAGTGCGCCATGATCTCCAAGTCT 10933892 Query 363688 GCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGG 363746 || || || ||||| | | || | || |||||||| || || | ||| |||| Sbjct 10933891 GCTGGTGGCATTGGACTCAACG-TGCATTGCATTCGTGCAAAGGGCACCTCGATTTGCGG 10933833 Query 363747 CACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAG 363806 |||| ||| || |||||| ||||||||||||| | || || ||||| ||| | Sbjct 10933832 CACAAACGGAACGTCCAATGGGTTGGTTCCCATGCTCAGGGTCTTCAACAATGTGGCGCG 10933773 Query 363807 GTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCA 363866 || || |||||||| || || ||||| || || ||||| || || || ||||| Sbjct 10933772 TTATGTGGACCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCTG 10933713 Query 363867 TCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCG 363926 || | ||| | |||||||| || || || |||||||||||| || || || || Sbjct 10933712 GCACTCGGATGTCTTTGAGTTCCTCGAACTAAAGAAAAACACGGGCAAGGAAGAGAATCG 10933653 Query 363927 TGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGC 363986 || || |||||||| || || || ||| | | || | || ||||||||||||||||| Sbjct 10933652 CGCCCGCGATCTGTTTTACGCTCTGTGGATACCCGATCTCTTCATGAAGCGCGTGGAGGC 10933593 Query 363987 ---AGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATG 364043 ||| ||||||| ||| | ||||| ||| |||| || || || ||||| || Sbjct 10933592 CAACGGT---GATTGGTCGCTCATGTGCCCCCACAAATGCCCTGGCCTCCAAGATGTGTG 10933536 Query 364044 GGGTGACGACTATGTTGCTCTATACGAAAA---GTATG---AATCGGAGGGAAAGGCTCG 364097 ||| || || || |||||| ||||| ||| ||| | ||| ||| Sbjct 10933535 GGGCGATGA------------ATTCGAAAAGCTGTATGAGAAATACGAGCAAGAGGGTCG 10933488 Query 364098 TAAGACAATTCCCGCACAG--AAG---------CTATGGTTTGCCATCATGGATTCGCAG 364146 || ||| ||| || | ||| || |||| ||||||||| || |||| Sbjct 10933487 --AGCCAA---CCGAACGGTTAAGGCTCAATCCCTGTGGTATGCCATCATTGAGGCGCAA 10933433 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 | || || |||| || || ||| | | ||| || | |||||| | ||| ||||||| Sbjct 10933432 GTGGAAACTGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAG 10933373 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 ||| | |||| || || || |||||| | || || || || |||||||| |||| Sbjct 10933372 CAGAATGTTGGCACCATCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATACTCCGCG 10933313 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAA--- 364323 || || |||| || || || ||| | || || || || || |||||| | | Sbjct 10933312 CCGGATGAGATAGCTGTCTGCAACTTGGCATCCATTGCCCTCAACATGTTTGTCACACCG 10933253 Query 364324 GATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTC 364383 || || | ||| | || | || | || || ||| | | ||| | ||||| Sbjct 10933252 GAGAAGACGTATGATTTCAAGAAGCTCAAGGAAGTCACCAAGATAGTTACCAGAAATCTA 10933193 Query 364384 GACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGT 364443 ||||| | || || | || |||||||| | || || || | || ||| || | Sbjct 10933192 AACAAGATAATTGATATCAACTATTATCCCTTGCCAGAGGCAAGGAAGTCAAATTTGAGG 10933133 Query 364444 CATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG--- 364500 || || || | || | ||| | ||||| ||||||||| | |||| |||| | Sbjct 10933132 CACCGTCCCGTGGGCATAGGTATTCAGGGATTCGCTGACGCCT---TGATTCTCATGCGA 10933076 Query 364501 ATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTAT 364560 | | | ||| || || || | | ||| || |||| || ||||| || || Sbjct 10933075 TTCCCGTATGAAAGTGAAGAAGCCGGTCTGTTGAATCAGCAGATATTCGAAACCATTTAC 10933016 Query 364561 TTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTAT 364620 | || || || || ||||| |||| | ||| | || ||| || ||| Sbjct 10933015 TATGGAGCCTTGGAAGCCAGCTGTGAACTGGCCCAGACCGAAGGCCCTTACGAAACCTAT 10932956 Query 364621 GAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGG---AATGTCACGCCA 364677 ||||| ||| | |||||| || |||| || | ||| || ||| ||| Sbjct 10932955 GAGGGCAGCCCGGTGAGCAAGGGAATTTTGCAGTACGACATGTGGGACAAGGTC---CCA 10932899 Query 364678 TCTGTCCGATGGAACTGGGATACGCT-ACG--TTCCAACGTTAAGAAGCATGGTACTCGC 364734 | || ||| ||||| | | || | | |||| | |||||||| ||| ||| Sbjct 10932898 ACGAACCTTTGGGACTGGCAGAAACTGAAGGAGTCCA---TCAAGAAGCACGGTGTCCGC 10932842 Query 364735 AACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAAC 364794 |||||||| | || || |||||||| || ||||| || || || | || ||||| Sbjct 10932841 AACTCCCTGCTGGTTGCTCCAATGCCCACTGCATCTACAGCTCAAATAATGGGCAACAAT 10932782 Query 364795 GAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTT 364854 || | |||||| || | ||| | || | || | | || ||||| ||||| || ||| Sbjct 10932781 GAATCCTTCGAGCCCTATACCACGAACATATACACCAGGCGAGTTCTGTCCGGCGAGTTT 10932722 Query 364855 CCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC 364914 | ||| || || | | | | || || | || | | |||||| ||| | Sbjct 10932721 CAGGTGGTCAACCATCATTTGTTGCGCGACCTAACAGAGCTGGACTTGTGGGACGACGAC 10932662 Query 364915 ATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAA 364974 ||||||||| | ||||| || | || || | || |||||| ||| ||| | Sbjct 10932661 ATGAAGAACCAGATCATATCCAGCAGGGGCTCAATCCAAAACATT-GAGGCCATCCCCCA 10932603 Query 364975 GATCTGAAGC-CTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC--TCATTGAT 365031 || || | | ||||| || || |||||||| || | || || ||| | Sbjct 10932602 GAGGGTTCGCGATCTGTACAAGACGGTGTGGGAAATCTC--AGTTAAGTCCACGATTAAA 10932545 Query 365032 ATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA--TGA 365089 ||||| ||||| || ||||| || || |||||| |||||||| ||| ||||| || Sbjct 10932544 ATGGCCGCCGACCGTGGTGCGTTCATAGATCAGAGTCAGTCGTTCAAC--ATTCATGTGG 10932487 Query 365090 CTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTA 365149 | |||| | || | || || || ||||| || || ||| |||||| | ||||||| Sbjct 10932486 CAGAGCCCAACTATGGAAAACTGACCTCCATACACTTTTACTCCTGGAAAGCTGGTCTTA 10932427 Query 365150 AGACAGG 365156 | || || Sbjct 10932426 AAACCGG 10932420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303268033206968