Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5124 86.0 5e-12 seq5123 84.2 2e-11 seq1295 84.2 2e-11 >seq5124 Length=26641161 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 |||| ||||| | || || || || | || || || | || || | || ||||| Sbjct 11019181 ACAAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAA- 11019239 Query 24046 CCAACG-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCC 24104 ||| || | || ||||| | |||||| |||||| ||||||||||| || ||||| Sbjct 11019240 CCATCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCA 11019299 Query 24105 GATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGAT 24164 ||||| ||| | ||||| | || |||||||| || ||||||| | | | || || Sbjct 11019300 GATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGAC 11019359 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||||||||| || || || || | || || ||| Sbjct 11019360 TATAACATTCAGAAGGAGTCCACTCTGCACTTGGTG 11019395 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 131863 CACGGTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTT 131922 ||||||||| ||||| | ||||||||| ||||| || | | ||| ||||| || || || Sbjct 10932368 CACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCCGGTTTT 10932427 Query 131923 CAAGCCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGC 131982 | || | ||| || ||| ||||||||| | | || ||| |||| | || Sbjct 10932428 AAGACCAGCTTTCCAGGAGTAAAAGTGTATGGAGGTCAGTTTTCCATAGTTGGGCTCTGC 10932487 Query 131983 CACAAACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATT 132042 |||| | |||| ||| ||||||||||| ||| | | || | ||| |||||||| || Sbjct 10932488 CACATGAATGTTGAACGACTGACTCTGATCTATGAACGCACCACGGTCGGCGGCCATTTT 10932547 >seq5123 Length=25762168 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| ||||||| ||| ||| | Sbjct 6599195 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAG-CCATC 6599137 Query 24051 G-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 | |||| || ||| | || || ||||| || || || || || ||||| ||||| Sbjct 6599136 GGACACTATTGAGAATGTGAAGGCTAAGATCCAAGATAAGGAGGGAATCCCTCCAGATCA 6599077 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | ||||||| || |||||||||||| ||||| | | | | | |||||| || Sbjct 6599076 GCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 6599017 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || || || || || |||| || || Sbjct 6599016 CATCCAGAAGGAGTCGACCCTTCACTTGGT 6598987 >seq1295 Length=1233 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | ||||| || | || ||| | ||||| ||| ||| | Sbjct 1057 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAG-CCATC 999 Query 24051 G-ACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 | |||| || ||| | || || ||||| || || || || || ||||| ||||| Sbjct 998 GGACACTATTGAGAATGTGAAGGCTAAGATCCAAGATAAGGAGGGAATCCCTCCAGATCA 939 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | ||||||| || |||||||||||| ||||| | | | | | |||||| || Sbjct 938 GCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 879 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||| || || || || || |||| || || Sbjct 878 CATCCAGAAGGAGTCGACCCTTCACTTGGT 849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429909151034220