Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq5123 109 4e-19 seq5121 84.2 2e-11 >seq5123 Length=25762168 Score = 109 bits (120), Expect = 4e-19 Identities = 189/268 (71%), Gaps = 10/268 (4%) Strand=Plus/Plus Query 16672 TTTATTTTAAAATGTATTATTGTTTA-GCC-GCATTTACCCTCCTCGTAGCCTCAGTACC 16729 ||||||| ||||||||| | ||||| ||| ||||| ||||| || || | || ||| Sbjct 6598250 TTTATTTGGAAATGTATT-TAGTTTAAGCCTGCATT---CCTCCGCGGAGACGGAGCACC 6598305 Query 16730 ATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAAT 16789 | |||| ||||||||||| || |||||||| |||| || ||| | ||||| | Sbjct 6598306 AAGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCGGACAAGGTGCGTCCATCCTCGAGC 6598365 Query 16790 TGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAA 16847 |||||||| || |||| || ||||| || || || | ||||| ||||| || Sbjct 6598366 TGTTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGGATC 6598425 Query 16848 TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTC 16907 || || |||||| | | | |||||| |||||| ||| | ||||||||| || | Sbjct 6598426 TTAGC--CTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCGAGGGTGATGGTCTTGC 6598483 Query 16908 CGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || || || || || ||||| Sbjct 6598484 CAGTCAGGGTCTTCACGAAGATTTGCAT 6598511 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||| |||| || ||| |||| Sbjct 6601036 AGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCT 6601095 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| ||| | || || ||||| || || ||| | ||||| || || Sbjct 6601096 TCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCC 6601155 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| | | | || || ||||||| |||| ||||| || Sbjct 6601156 TGAATCTTGGCCTTCACATTCTCGATGGTATCCGAGGGCTCCACCTCCAAAGTGATTGTC 6601215 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 ||||| |||| || || ||||| |||||||||||| Sbjct 6601216 TTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTTG 6601251 >seq5121 Length=18748788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||||||||| || ||||||||||||| | Sbjct 15142613 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15142672 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || || || || | || | ||||| || || ||| Sbjct 15142673 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 15142732 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | || ||| ||||| Sbjct 15142733 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTATCGGATGGCTCAA 15142790 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || || || || || ||||| |||||||| Sbjct 15142791 CCTCCAAGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 15142839 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||||||||| || ||||||||||||| | Sbjct 15142841 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15142900 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || || || || | || | ||||| || || ||| Sbjct 15142901 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 15142960 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | || ||| ||||| Sbjct 15142961 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTATCGGATGGCTCAA 15143018 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || || || || || || ||||| |||||||| Sbjct 15143019 CCTCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15143067 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||||||||| || ||||||||||||| | Sbjct 15143753 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15143812 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| ||||||||| || || || || | || | ||||| || || || Sbjct 15143813 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 15143872 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | || ||| ||||| Sbjct 15143873 ATTCCCTCCTTGTCCTGGATCTTGGC--CTTGACGTTCTCGATGGTATCGGATGGCTCAA 15143930 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| ||||||||| || || ||||| || || || ||||| ||||| ||| Sbjct 15143931 CCTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTTACGAAAATTTGCATATTG 15143983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405062702760760