Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5124 358 8e-94 >seq5124 Length=26641161 Score = 358 bits (396), Expect = 8e-94 Identities = 1206/1869 (65%), Gaps = 24/1869 (1%) Strand=Plus/Plus Query 61840 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 61899 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 10932362 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCC 10932421 Query 61900 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 61959 ||||| ||||| |||| |||||| || || || ||||| ||| | || Sbjct 10932422 GGTTTTAAGACCAGCTTTCCAGGAGTAAAAGTGTATGGAGGTCAGTTTTCCATAGTTGGG 10932481 Query 61960 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62019 ||||| | ||| || || | || ||||| ||||| ||||| || || | ||| || || Sbjct 10932482 CTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCACCACGGTCGGCGGC 10932541 Query 62020 CATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62078 |||||| || | | ||| || |||||||| | || || || | |||| | | Sbjct 10932542 CATTTTAATCGTGGACTTAACTGAGATTTCCCACACCGTCTTGTACAGATCGCGAACCCT 10932601 Query 62079 CTTCTGGAAGGTTTGTAT--TCTGAATGGATCCACCATCTGCC-ATAATCCTATTCTTGA 62135 || ||| || | || | || || || || || ||| || ||| ||||| | Sbjct 10932602 CTGGGGGATGGCCTCAATGTTTTGGATTGAGCC-CCTGCTGGATATGATCTGGTTCTTCA 10932660 Query 62136 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 62195 | || || | ||| || | ||| |||| | | | | ||| | || || || | Sbjct 10932661 TGTCGTCGTCCCACAAGTCCAGCTCTGTTAGGTCGCGCAACAAATGATGGTTGACCACCT 10932720 Query 62196 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 62255 |||| || || |||| |||| || ||||| || || ||||||| || || | || | Sbjct 10932721 GAAACTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGATT 10932780 Query 62256 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62315 |||| || |||| |||||||| || |||||||| ||||| || || |||| | | Sbjct 10932781 CATTGTTGCCCATTATTTGAGCTGTAGATGCAGTGGGCATTGGAGCAACCAGCAGGGAGT 10932840 Query 62316 TTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACG 62375 | | | ||||| | |||| || || || | ||| | |||||| | || | Sbjct 10932841 TGCGGACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTCGTTG 10932900 Query 62376 GTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACATAT 62434 | || || | ||| || || || | | | ||| |||| Sbjct 10932901 GGACCTTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCT-CATAG 10932959 Query 62435 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 62494 || ||||| || ||||| ||| || |||||||| || || || || || || || ||| Sbjct 10932960 GTTTCGTAAGGGCCTTCGGTCTGGGCCAGTTCACAGCTGGCTTCCAAGGCTCCATAGTAA 10933019 Query 62495 ATGGTTTCGAAGATCTTCTTATTTA---GATCTTGCGCTTCCAGGCTATCAAATGGATAA 62551 ||||||||||| |||| || ||| | || | ||||| || ||| | || | Sbjct 10933020 ATGGTTTCGAATATCTGCTGATTCAACAGACCG---GCTTCTTCACTTTCATACGGGAAT 10933076 Query 62552 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 62611 | |||||| || ||||| || ||||| |||| ||| || || | || | || ||| Sbjct 10933077 CGCATGAGAATCAAGGCGTCAGCGAATCCCTGAATACCTATGCCCACGGGACGGTGCCTC 10933136 Query 62612 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGA 62671 ||| || | || ||||| | |||||||| || ||||| || || || || ||| Sbjct 10933137 AAATTTGACTTCCTTGCCTCTGGCAAGGGATAATAGTTGATATCAATTATCTTGTTTAGA 10933196 Query 62672 TTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---T 62728 |||||| || || ||| || ||||| || || |||||| | | || | Sbjct 10933197 TTTCTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTCTCCGGT 10933256 Query 62729 ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62788 | ||||||||||| | |||| ||||||| || || || |||| ||||| | | Sbjct 10933257 GTGACAAACATGTTGAGGGCAATGGATGCCAAGTTGCAGACAGCTATCTCATCCGGCGCG 10933316 Query 62789 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 62848 | |||| | || || ||||| | || || ||||||||||| || | ||| || || Sbjct 10933317 GAGTATTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTGG 10933376 Query 62849 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 62908 || ||||| |||| || || ||||| | || ||| | ||| | |||||||| | || Sbjct 10933377 TTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTGC 10933436 Query 62909 GATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT 62968 | || || || || | ||| | | | ||||||| | | ||| ||| || Sbjct 10933437 GCCTCAATGATGGCATACCACAGGGATTGAGCCTTAACCGTTCGGTTG--GCTCGACCCT 10933494 Query 62969 CTT--TCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAG 63026 ||| |||||| ||||| |||||| || || ||||| |||| | || |||| Sbjct 10933495 CTTGCTCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCAG 10933554 Query 63027 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63086 | |||| | || ||||| | |||||| || |||| ||| ||| || ||||| |||| Sbjct 10933555 GGCATTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGCTTCATGAAGA 10933614 Query 63087 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63146 |||| || ||||| ||||| ||| ||||| | || | || || || || || || | Sbjct 10933615 GATCGGGTATCCACAGAGCGTAAAACAGATCGCGGGCGCGATTCTCTTCCTTGCCCGTGT 10933674 Query 63147 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63206 | || || || ||||||||| | | | ||| || ||||| || |||| ||| ||||| | Sbjct 10933675 TTTTCTTTAGTTCGAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAA 10933734 Query 63207 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63266 | || || || ||| |||||||| || | || | || || || | || | Sbjct 10933735 AGGCACCGGGACGCTTGCCGCCTCCCTGGTCCACATAACGCGCCACATTGTTGAAGACCC 10933794 Query 63267 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGG 63326 | | ||| |||| | |||||||| || || || || || | || || | || | | Sbjct 10933795 TGAGCATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCGCAAATCGAGGTGCCCTTTG 10933854 Query 63327 CACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 63384 ||||||| | | | ||| || || || || || || || ||||| | ||||| Sbjct 10933855 CACGAATGCAATGCACGTTG--AGTCCAATGCCACCAGCAGACTTGGAGATCATGGCGCA 10933912 Query 63385 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 63444 | | | | | | | |||||||| || || | ||||| | || || ||||| Sbjct 10933913 CTGCTCCACAGACTTAAAAATGCCCTCGATTGAGTCGGCAGTCATGGTCAGAAGGAAACA 10933972 Query 63445 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAA 63504 |||| || | || | || | ||| ||| | || || || || || ||||| Sbjct 10933973 CGACGACAGCTGCGGGCGGTTTGTGGCAGCAGCAAACAGCGTGGGCGATGCATGCGTAAA 10934032 Query 63505 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63564 | || || || |||||||| || || | || | ||||||||| | ||| || Sbjct 10934033 GTAGCGCTCCGATAGAAGATTGTAGGTTTCCACGGCCGCATCTATATCCTCTCCATGGAT 10934092 Query 63565 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 63624 ||| | || || ||||| | ||| ||||| |||| || ||||||| |||| | || Sbjct 10934093 TCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTGTCTT 10934152 Query 63625 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63684 | | ||||| |||| ||| ||||| ||||||||||| || |||||| || || Sbjct 10934153 GAGGAGATAGGAACGCTCCAGAGTCTTAAAGCCAAAATAGTTATAGCCAAAGTCACGATC 10934212 Query 63685 GTAAATAAT 63693 || || || Sbjct 10934213 ATAGATTAT 10934221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633591415870400