Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12]
5,124 sequences; 152,712,140 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq5124 154 1e-32
seq5123 125 6e-24
seq1295 109 5e-19
>seq5124
Length=26641161
Score = 154 bits (170), Expect = 1e-32
Identities = 196/267 (73%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 51010 TAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCTTTGAACGGCCTGTCGTGCACA 51069
|||||||| |||| | |||| ||||| || || || || | |||| || ||
Sbjct 18899918 TAGTTCATGTACCGAACCTTGCCGAAAATAGCCCGCTCCTTCCACCCCATGTCATGGACG 18899977
Query 51070 CCGCAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAA 51129
|||| |||||||||||| || |||||||| ||| |||||||| ||||||| || ||
Sbjct 18899978 CCGCCAATTGACCACATGCAGCCCACATAGCCGTTGGGATCGCGTCCATCCAGACTATAC 18900037
Query 51130 TGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCTGCACTAGGCGTCCATTCCATA 51189
| ||||| || || || || || |||| ||| || | | | |||||||||| |
Sbjct 18900038 TTGTCGTTCAGCAAGATCGCGTACTCCAACGCCCGCTCGGGGGTGGCAGTCCATTCCAGA 18900097
Query 51190 ATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCGC-AACGAAGCTG 51248
|| || ||||||||||||||||||| | |||||||| || ||||||| || || |||
Sbjct 18900098 ATCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACCAA-CTG 18900156
Query 51249 CGCTTGAGCCGAGTTCCACAATTCGTC 51275
| ||| ||||||||||||| |||||
Sbjct 18900157 CAGTTGCGCCGAGTTCCACAGGTCGTC 18900183
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/216 (70%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| | || || || ||||||| | || || || | ||
Sbjct 11019186 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCATCG 11019245
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| |||||||| |||| |||| || | ||| ||||||||||| ||||| || ||
Sbjct 11019246 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 11019301
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||||| | || || || ||||| || | ||||||| |||||| | || ||
Sbjct 11019302 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTA 11019361
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| ||||| || || ||||| || || || |||||
Sbjct 11019362 TAACATTCAGAAGGAGTCCACTCTGCACTTGGTGCT 11019397
>seq5123
Length=25762168
Score = 125 bits (138), Expect = 6e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| |||| || || ||||||| ||||||||||| | ||
Sbjct 6598511 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 6598452
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||||| ||| ||||| || ||| ||||| || || || || || || ||
Sbjct 6598451 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCCCCAGATCAG 6598392
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | ||||| ||||||||||| | || |||| ||||| || |||||||||
Sbjct 6598391 CAGCGTCTGATTTTCGCCGGCAAACAGCTCGAGGATGGACGCACCTTGTCCGATTACAAC 6598332
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| || || || ||||| | || || ||||| | || | |||||||
Sbjct 6598331 ATCCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTCCGCGGAGGAA 6598283
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||| || || ||||||| ||||||||||| | ||
Sbjct 6599195 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 6599136
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||||| ||| ||||| || ||| || || || || || || || || ||
Sbjct 6599135 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGATAAGGAGGGAATCCCTCCAGATCAG 6599076
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | ||||| |||||||| ||| | ||||| | ||||| || |||||||||
Sbjct 6599075 CAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 6599016
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || ||
Sbjct 6599015 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 6598984
Score = 100 bits (110), Expect = 2e-16
Identities = 152/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| ||||| || || | ||||| | || |||||| | ||
Sbjct 6601248 AATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACAATCACTTTGGAGGTGGAGCCCTC 6601189
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || |||||| ||||| | || | ||| || || || || ||||| || || |
Sbjct 6601188 GGATACCATCGAGAATGTGAAGGCCAAGATTCAG-GATAAGGAGGGAATTCCTCCAGATC 6601130
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | || ||||||||||| || | ||||| | ||||| || ||||||||
Sbjct 6601129 AGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGATTACA 6601070
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || || || || || || || || || ||
Sbjct 6601069 ACATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 6601036
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| || || | ||||| | || |||||| | ||
Sbjct 6600107 ATGCAGATCTTCGTGAAGACCTTGACTGGAAAGACAATCACTTTGGAGGTGGAGCCCTCG 6600048
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || |||||| ||||| | || | ||| || || || || ||||| || || ||
Sbjct 6600047 GATACCATCGAGAATGTGAAGGCCAAGATTCAG-GATAAGGAGGGAATTCCTCCAGATCA 6599989
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | || ||||||||||| || | ||||| | ||||| || |||||||||
Sbjct 6599988 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGATTACAA 6599929
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || ||
Sbjct 6599928 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 6599896
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||| || || ||||||| ||||||||||| | ||
Sbjct 6600791 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 6600732
Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| ||| |||| || || | ||| ||||| || || || || || || ||
Sbjct 6600731 GACACTATTGAGAATGTGAAGGCTAAGATTCA-AGACAAGGAGGGAATCCCCCCAGATCA 6600673
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| | ||||| |||||||| || | || |||| |||||| | || || ||
Sbjct 6600672 GCAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGACGCACTCTTTCTGACTATAA 6600613
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || ||
Sbjct 6600612 CATACAGAAGGAGTCGACCCTTCACTTGGTTCT 6600580
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| |||| || || ||||||| | || |||||| | ||
Sbjct 6601019 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTGGAGCCTTCC 6600960
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || || || ||||| |||||| || || || || || || || || ||
Sbjct 6600959 GATACCATTGAAAACGTGAAGGCCAAAATCCAAGATAAGGAGGGAATCCCCCCAGATCAG 6600900
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || ||||||||||| || | ||||| | ||||| || |||||||||
Sbjct 6600899 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGATTACAAC 6600840
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || ||
Sbjct 6600839 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 6600808
>seq1295
Length=1233
Score = 109 bits (120), Expect = 5e-19
Identities = 152/212 (72%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| |||| || || ||||||| ||||||||||| | ||
Sbjct 373 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 314
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||||| ||| ||||| || ||| ||| | || || || || || || ||
Sbjct 313 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGAC-AGGAGGGAATCCCCCCAGATCAG 255
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | ||||| |||||||| ||| | ||||| | ||||| || |||||||||
Sbjct 254 CAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTACAAC 195
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || || || || ||
Sbjct 194 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 163
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| |||| || || ||||||| ||||||||||| | ||
Sbjct 829 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 770
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||||| ||| ||||| || ||| ||||| || || ||||| || || ||
Sbjct 769 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAG 710
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | ||||| |||||||| || | || |||| |||||| | || || ||
Sbjct 709 CAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGACGCACTCTTTCTGACTATAAC 650
Query 25179 ATTCAAAAAGAATCCAC 25195
|| || || || |||||
Sbjct 649 ATCCAGAAGGAGTCCAC 633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433300939208060
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |