Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5124 154 1e-32 seq5123 125 6e-24 seq1295 109 5e-19 >seq5124 Length=26641161 Score = 154 bits (170), Expect = 1e-32 Identities = 196/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 51010 TAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTCTTTGAACGGCCTGTCGTGCACA 51069 |||||||| |||| | |||| ||||| || || || || | |||| || || Sbjct 18899918 TAGTTCATGTACCGAACCTTGCCGAAAATAGCCCGCTCCTTCCACCCCATGTCATGGACG 18899977 Query 51070 CCGCAAATTGACCACATACAACCCACATAATTGTTAGGATCGCGACCATCCACGCTGTAA 51129 |||| |||||||||||| || |||||||| ||| |||||||| ||||||| || || Sbjct 18899978 CCGCCAATTGACCACATGCAGCCCACATAGCCGTTGGGATCGCGTCCATCCAGACTATAC 18900037 Query 51130 TGATCGTTTAGAAATATGGCATAACCCAATGCCATGTCTGCACTAGGCGTCCATTCCATA 51189 | ||||| || || || || || |||| ||| || | | | |||||||||| | Sbjct 18900038 TTGTCGTTCAGCAAGATCGCGTACTCCAACGCCCGCTCGGGGGTGGCAGTCCATTCCAGA 18900097 Query 51190 ATTTTCTTGGCCCAGTACATGCGCATGTAACCGTGCATCTTGCCCTCGC-AACGAAGCTG 51248 || || ||||||||||||||||||| | |||||||| || ||||||| || || ||| Sbjct 18900098 ATCTTTTTGGCCCAGTACATGCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACCAA-CTG 18900156 Query 51249 CGCTTGAGCCGAGTTCCACAATTCGTC 51275 | ||| ||||||||||||| ||||| Sbjct 18900157 CAGTTGCGCCGAGTTCCACAGGTCGTC 18900183 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || || | || Sbjct 11019186 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCATCG 11019245 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||| |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 11019246 GATACTATCGAAAATGTCA---AAGCCAAGATTCAG-GACAAAGAAGGAATTCCTCCAGA 11019301 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | || || || ||||| || | ||||||| |||||| | || || Sbjct 11019302 TCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTA 11019361 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || ||||| || || || ||||| Sbjct 11019362 TAACATTCAGAAGGAGTCCACTCTGCACTTGGTGCT 11019397 >seq5123 Length=25762168 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || || ||||||| ||||||||||| | || Sbjct 6598511 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 6598452 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| ||||| || ||| ||||| || || || || || || || Sbjct 6598451 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCCCCAGATCAG 6598392 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| ||||||||||| | || |||| ||||| || ||||||||| Sbjct 6598391 CAGCGTCTGATTTTCGCCGGCAAACAGCTCGAGGATGGACGCACCTTGTCCGATTACAAC 6598332 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || ||||| | || || ||||| | || | ||||||| Sbjct 6598331 ATCCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTCCGCGGAGGAA 6598283 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| ||||||||||| | || Sbjct 6599195 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 6599136 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| ||||| || ||| || || || || || || || || || Sbjct 6599135 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGATAAGGAGGGAATCCCTCCAGATCAG 6599076 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| |||||||| ||| | ||||| | ||||| || ||||||||| Sbjct 6599075 CAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 6599016 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 6599015 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 6598984 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||| || || | ||||| | || |||||| | || Sbjct 6601248 AATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACAATCACTTTGGAGGTGGAGCCCTC 6601189 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || |||||| ||||| | || | ||| || || || || ||||| || || | Sbjct 6601188 GGATACCATCGAGAATGTGAAGGCCAAGATTCAG-GATAAGGAGGGAATTCCTCCAGATC 6601130 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||||||||| || | ||||| | ||||| || |||||||| Sbjct 6601129 AGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGATTACA 6601070 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || || || || || || || || Sbjct 6601069 ACATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 6601036 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || | ||||| | || |||||| | || Sbjct 6600107 ATGCAGATCTTCGTGAAGACCTTGACTGGAAAGACAATCACTTTGGAGGTGGAGCCCTCG 6600048 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| ||||| | || | ||| || || || || ||||| || || || Sbjct 6600047 GATACCATCGAGAATGTGAAGGCCAAGATTCAG-GATAAGGAGGGAATTCCTCCAGATCA 6599989 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||||||||| || | ||||| | ||||| || ||||||||| Sbjct 6599988 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGATTACAA 6599929 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 6599928 CATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 6599896 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| ||||||||||| | || Sbjct 6600791 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 6600732 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||||||| ||| |||| || || | ||| ||||| || || || || || || || Sbjct 6600731 GACACTATTGAGAATGTGAAGGCTAAGATTCA-AGACAAGGAGGGAATCCCCCCAGATCA 6600673 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | ||||| |||||||| || | || |||| |||||| | || || || Sbjct 6600672 GCAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGACGCACTCTTTCTGACTATAA 6600613 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 6600612 CATACAGAAGGAGTCGACCCTTCACTTGGTTCT 6600580 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || || ||||||| | || |||||| | || Sbjct 6601019 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTGGAGCCTTCC 6600960 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| |||||| || || || || || || || || || Sbjct 6600959 GATACCATTGAAAACGTGAAGGCCAAAATCCAAGATAAGGAGGGAATCCCCCCAGATCAG 6600900 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | ||||| | ||||| || ||||||||| Sbjct 6600899 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGATTACAAC 6600840 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 6600839 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 6600808 >seq1295 Length=1233 Score = 109 bits (120), Expect = 5e-19 Identities = 152/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || || ||||||| ||||||||||| | || Sbjct 373 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 314 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| ||||| || ||| ||| | || || || || || || || Sbjct 313 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGAC-AGGAGGGAATCCCCCCAGATCAG 255 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| |||||||| ||| | ||||| | ||||| || ||||||||| Sbjct 254 CAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTACAAC 195 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || || || || Sbjct 194 ATCCAGAAGGAGTCGACCCTTCACTTGGTTCT 163 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||| || || ||||||| ||||||||||| | || Sbjct 829 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 770 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| ||| ||||| || ||| ||||| || || ||||| || || || Sbjct 769 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAG 710 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | ||||| |||||||| || | || |||| |||||| | || || || Sbjct 709 CAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGACGCACTCTTTCTGACTATAAC 650 Query 25179 ATTCAAAAAGAATCCAC 25195 || || || || ||||| Sbjct 649 ATCCAGAAGGAGTCCAC 633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433300939208060