Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5122 257 2e-63 seq5119 120 3e-22 seq5120 114 1e-20 >seq5122 Length=22589142 Score = 257 bits (284), Expect = 2e-63 Identities = 557/825 (68%), Gaps = 10/825 (1%) Strand=Plus/Minus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 ||||| || | || || || ||||| || || |||||||| |||| || ||| | | Sbjct 17925966 TGGTACTCTGCCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGCGAGATCATCTCC 17925907 Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT-AA 92922 | | ||| || ||||||| ||| || ||| || || |||||| |||| || Sbjct 17925906 ATGAAGTTGAAGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAACTCC-ACAAGCAA 17925848 Query 92923 TCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACG 92982 | || || || || ||||||||||| ||||||| ||||||||||| || | | | Sbjct 17925847 ACGGTCCGCAACGAACTCTATGTACTGGGACATCAGGTCACAATTCATGCCGATTAAATT 17925788 Query 92983 TACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTC 93042 || || || || ||||| | ||| || | ||| || | || || || | ||| || Sbjct 17925787 AACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATCGCCACCGCGTCACGGATGATCTC 17925728 Query 93043 TATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG-CAAA 93099 || | | || | |||| || || || | | | | |||| | ||||| |||| Sbjct 17925727 GATGATGCGCTCGTGCTTGG--GTCGCTGCACCAGGTGCTGGAACATCA-GCACGGCAAA 17925671 Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159 |||| || || || ||||| || || || | ||| ||| ||| || | || || | Sbjct 17925670 GTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGTCCAGGCAT 17925611 Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 || || || ||||| ||||| || || || ||||| || || || || || || || Sbjct 17925610 TAGACCGCGCTTCTTAAGCCAGAAAATGGATGCAAAGCTGCCGCTGAAGAAGATGCCCTC 17925551 Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279 |||||| ||||| || | ||||| || | ||||| || || || | |||||| Sbjct 17925550 CACGGCGGCAAAGGCGATGATACGCTCCCCGAAATTGGCAGACTTGGAGGAGATCCAGGA 17925491 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 | ||||| || || || ||| | | || | |||||||||||||| || ||||| Sbjct 17925490 CAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTA 17925431 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 || |||| || || ||| || ||||| || ||||| | || | ||||| || || || Sbjct 17925430 CTCGCGCTGGTTCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAGTG 17925371 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 || |||||||| || || ||||| |||||||| || | || ||||||| |||||| || Sbjct 17925370 CACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGTGCCTCCGTGACCTGCACCTC 17925311 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 ||| || | ||| || ||||| || || || || |||||||| || || || ||||| Sbjct 17925310 CTGACTGAAGCGCTCCACCAGATTCTCGTTTACGATGCCATCGGAGGCGGCGAAGAAAGC 17925251 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 || | ||| || ||||| ||| || || || || | ||| || | || || Sbjct 17925250 CAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGTCGGTGCCAGTCAGTAAGGTC 17925191 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || | ||| || || ||||| ||||| || || ||||| || Sbjct 17925190 CTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAGGCTTCAGC 17925146 >seq5119 Length=10470090 Score = 120 bits (132), Expect = 3e-22 Identities = 80/88 (91%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||||||||||||||| |||||||||||||||||||||| | |||||| | |||| Sbjct 7971773 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTTTGGTTCTCGAGAGGGA 7971714 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||||| Sbjct 7971713 GCGTGGGTTCGAACCCCACACCTGACAA 7971686 Score = 111 bits (122), Expect = 2e-19 Identities = 78/88 (89%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||| ||||||||||||| |||||||||||||||||||||| |||||||| | | ||| Sbjct 8120426 CAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAG 8120367 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||| |||| Sbjct 8120366 CGTGGGTTCGAACCCCACACCTGGCAAA 8120339 >seq5120 Length=17746568 Score = 114 bits (126), Expect = 1e-20 Identities = 83/95 (87%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 5242456 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAGC 5242515 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||||||||||||||||||| |||||| || || Sbjct 5242516 GTGGGTTCGAACCCCACACCTGGCAAATTTTTTTT 5242550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556825133065760