Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5124 176 8e-39 seq5121 170 4e-37 seq5123 161 2e-34 seq1295 158 2e-33 >seq5124 Length=26641161 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||||||| || |||||||| || || |||||||| || ||| Sbjct 11019412 CCACCACGCAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 11019353 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || || | || || || || ||| Sbjct 11019352 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 11019293 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| |||||||| || ||||| ||||| || || | || ||| || Sbjct 11019292 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACC 11019233 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || |||||||||||||| ||||| |||||||| Sbjct 11019232 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11019186 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || || ||||| || |||||||| || ||||| Sbjct 4301718 CCACCACGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 4301659 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || || || || ||| Sbjct 4301658 AGAGTGCGACCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 4301599 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| |||||||| |||||||||||| | | || || Sbjct 4301598 ATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACC 4301539 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || |||||||| || ||||| || ||||| Sbjct 4301538 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4301492 Score = 107 bits (118), Expect = 4e-18 Identities = 178/253 (70%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| | ||| ||||||| || || || ||||| | ||||| ||||| |||||||| | Sbjct 5054183 CTGCAACATCATCCACATGGCCTCCACGTAGTCGCTGGCATGTCCCCAGTCGCGCTTGGA 5054242 Query 268306 GTCCATGTTCCCGAGGAACAGGCATTTC---TGCTTGCCGAGCTTCACGCGTG-CAAGAC 268361 ||||| || || || | | | | | |||||| || | | | || | | | Sbjct 5054243 GTCCAGATTGCCCAGCTCGAAGTACTCCATTTGCTTGT-GA---TAAATCTTGGCCACGC 5054298 Query 268362 CGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGA 268421 || |||||||||| |||||| || ||||||||||| | || |||||||| ||||||| Sbjct 5054299 TACGGGTGATTTTTCTGGTCACAAAGTTCTCGCCACGTCGCGGACTCTCGTGATTGAAGA 5054358 Query 268422 GGATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATG 268481 | || || || || ||| ||||| ||| ||||| |||||||| | ||| |||| | Sbjct 5054359 GAATTCCATTACAGGCGTACATGTTATAGGCCTCCCGGTAGTTGATGACGATCCAAAAAC 5054418 Query 268482 CAAACATCTTTGC 268494 | ||||||| || Sbjct 5054419 CGTACATCTTAGC 5054431 >seq5121 Length=18748788 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || |||||||| || |||||||| || ||||| Sbjct 15142385 CCACCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15142444 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || |||| |||||| |||||||| || | | || || || || || Sbjct 15142445 AGGGTGCGACCGTCCTCTAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 15142504 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||| || | || || || Sbjct 15142505 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 15142564 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || || ||||||||||| || || |||||||| Sbjct 15142565 TCCAAGGTGATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15142611 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || |||||||| || |||||||| || ||||| Sbjct 15142841 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15142900 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | || || || || || Sbjct 15142901 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 15142960 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||| || | || || || Sbjct 15142961 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 15143020 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || ||||||||||| || || |||||||| Sbjct 15143021 TCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15143067 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || |||||||| || |||||||| || ||||| Sbjct 15143297 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15143356 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | || || || || || Sbjct 15143357 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 15143416 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||| || | || || || Sbjct 15143417 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 15143476 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || ||||||||||| || || |||||||| Sbjct 15143477 TCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15143523 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || |||||||| || |||||||| || ||||| Sbjct 15143525 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15143584 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | || || || || || Sbjct 15143585 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 15143644 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||| || | || || || Sbjct 15143645 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 15143704 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || ||||||||||| || || |||||||| Sbjct 15143705 TCCAAGGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15143751 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || |||||||| || |||||||| || ||||| Sbjct 15142613 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15142672 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | || || || || || Sbjct 15142673 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGG 15142732 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||| || | || || || Sbjct 15142733 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 15142792 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || || |||||||| || || |||||||| Sbjct 15142793 TCCAAGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 15142839 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || |||||||| || |||||||| || ||||| Sbjct 15143069 CCACCACGCAGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15143128 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | || || || || || Sbjct 15143129 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 15143188 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||| || | || || || Sbjct 15143189 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 15143248 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || || || ||||||||||| || || |||||||| Sbjct 15143249 TCCAAGGTGATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15143295 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| || |||||||| || |||||||| || ||||| Sbjct 15143753 CCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 15143812 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | || || || || || Sbjct 15143813 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 15143872 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||||||| ||||||||| || | || || || Sbjct 15143873 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 15143932 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || || || ||||| ||||| || ||||| Sbjct 15143933 TCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTTACGAAAATTTGCAT 15143979 >seq5123 Length=25762168 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||||||||| || || | |||||||| | |||||||| || |||||||| ||||||| Sbjct 6598283 TTCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCGG 6598342 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | ||||| || | ||| || |||||||| || || | || || || || | Sbjct 6598343 ACAAGGTGCGTCCATCCTCGAGCTGTTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGG 6598402 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || ||||||||||| ||||| ||||| || ||| || ||||| | || || | Sbjct 6598403 GGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCA 6598462 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| | ||||||||| || || || |||||||| ||||| || ||||| Sbjct 6598463 CTTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6598511 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || || |||||||| || || Sbjct 6600565 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGTATGTTATAGTCAGAA 6600624 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || || || || || Sbjct 6600625 AGAGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGG 6600684 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||| ||||| || ||| || ||||| | || || ||| Sbjct 6600685 ATTCCCTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACT 6600744 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||| ||||| |||||||| Sbjct 6600745 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6600791 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| | |||||||| || || |||||||| || || Sbjct 6598741 CCACCACGCAGACGGAGAACCAAGTGCAAAGTGGACTCCTTCTGTATGTTATAGTCAGAA 6598800 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || || || || || Sbjct 6598801 AGAGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGG 6598860 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||| ||||| || ||| || ||||| | || || || Sbjct 6598861 ATTCCCTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACC 6598920 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || || || |||||||| ||||| || ||||| Sbjct 6598921 TCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6598967 >seq1295 Length=1233 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| | |||||||| || ||||||||||| || || Sbjct 603 CCACCACGCAGACGGAGAACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAGTCAGAA 662 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || || || || ||| Sbjct 663 AGAGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGA 722 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||| ||||| || ||| || ||||| | || || ||| Sbjct 723 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACT 782 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||| ||||| || ||||| Sbjct 783 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921563370085280