Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq5124 100 2e-16 seq5123 86.0 5e-12 seq1295 86.0 5e-12 >seq5124 Length=26641161 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || || || || | || || || || |||||||| || || Sbjct 11019413 ACCACCACGCAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGA 11019354 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || ||| |||||| || || || |||||| |||| |||||||| || || ||||| Sbjct 11019353 GAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 11019294 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||||||||| |||||| ||| | | ||| | || || | | |||||| Sbjct 11019293 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGAC 11019234 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || ||||| || || || || || || |||||||| Sbjct 11019233 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 11019186 >seq5123 Length=25762168 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 6598510 ATACCTCCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 6598569 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| ||||| || || ||| | || |||||||| || || ||| Sbjct 6598570 GACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGA 6598629 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||| || | | |||| ||||| | | || Sbjct 6598630 GGGATTCCCTCCTTATCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCC 6598689 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| ||||| || || || || |||||||| Sbjct 6598690 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6598739 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 6598966 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 6599025 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| ||||| || || ||| | || |||||||| || || ||| Sbjct 6599026 GACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGA 6599085 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||| || | | |||| ||||| | | || Sbjct 6599086 GGGATTCCCTCCTTATCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCC 6599145 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| ||||| || || || || |||||||| Sbjct 6599146 ACTTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6599195 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 6599194 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 6599253 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| || || || || || ||| | || |||||||| || || ||| Sbjct 6599254 GACAGGGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGA 6599313 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||| || | | |||| ||||| | | || Sbjct 6599314 GGGATTCCCTCCTTATCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCC 6599373 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| ||||| || || || || |||||||| Sbjct 6599374 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 6599423 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 6600334 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 6600393 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| ||||| || |||||| | || |||||||| || || || Sbjct 6600394 GACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGG 6600453 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || || || || | | ||||| ||| |||| | || Sbjct 6600454 GGGATTCCCTCCTTATCTTGGATTTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCC 6600513 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| ||||| || || || || || ||||| Sbjct 6600514 ACCTCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6600563 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 6601018 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 6601077 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| || || || || || |||| |||||||| || || ||| Sbjct 6601078 GACAGGGTGCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGA 6601137 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || || || |||||| || | | || | ||| || | || || Sbjct 6601138 GGAATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTATCCGAGGGCTCC 6601197 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || |||| || || ||||| |||||||| Sbjct 6601198 ACCTCCAAAGTGATTGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCAT 6601247 >seq1295 Length=1233 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 372 ATACCTCCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 431 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| ||||| || || ||| | || |||||||| || || ||| Sbjct 432 GACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGA 491 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||| || | | |||| ||||| | | || Sbjct 492 GGGATTCCCTCCTTATCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCC 551 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| ||||| || || || || |||||||| Sbjct 552 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 601 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | ||| || || | || || || || || |||||||||||| Sbjct 828 ATACCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG 887 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| ||||| || || ||| | || |||||||| || || ||| Sbjct 888 GACAGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGA 947 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || ||||| || | | |||| ||||| | | || Sbjct 948 GGGATTCCCTCCTTATCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCC 1007 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| ||||| || || || || || ||||| Sbjct 1008 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 1057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420108163131888