Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5122 334 1e-86 seq5124 291 2e-73 >seq5122 Length=22589142 Score = 334 bits (370), Expect = 1e-86 Identities = 575/821 (70%), Gaps = 23/821 (3%) Strand=Plus/Plus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| ||||||| | || || |||||||| | | |||| ||| | |||| Sbjct 17925160 CTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGG----CACCGACTGA 17925215 Query 42395 -GAACGAAAAGTT---TTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 | |||| || |||| || || | ||||| |||||||||||||| || |||| Sbjct 17925216 AGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCTTTCTTCGCCGCCTCCGATGGCA 17925275 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510 | || || ||||| |||| | |||| | ||||||||| | ||||| |||| Sbjct 17925276 TCGTAAACGAGAATCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGGTCACGGAGGCACGCT 17925335 Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 ||||||||||||||||||| ||||| |||||||||||||| ||| ||||| ||| Sbjct 17925336 GCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAGTGTGCTGA 17925395 Query 42571 TCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA 42630 || |||| ||||||| |||||| | |||| | |||||||| || || || |||| Sbjct 17925396 TCGACACTTACATCCGGGATCCGAACCAGCGCGAGTACCTGTTCAACGCTATCGAAACGA 17925455 Query 42631 TGCC--CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCC-CGAC- 42686 |||| ||| | ||| ||||| |||||||| || ||||||| ||| | | Sbjct 17925456 TGCCGGCTG--TAAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATC--TCCTCCAAGTCT 17925511 Query 42687 GCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGC 42746 || | ||||| ||| | | | |||||| ||||||| ||||||||||||||| ||| Sbjct 17925512 GCCAATTTCGGGGAGCGTATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGC 17925571 Query 42747 GCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTC 42805 ||| || ||||| |||||||| ||| || ||| | ||||| ||||| |||||||| Sbjct 17925572 AGCTTTGCATCCATTTTCTGGCTTAAGAAGCGCGGTCT-AATGCCTGGACTGACCTTCTC 17925630 Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 ||||| || ||| | |||||||| |||| | ||||||||| || ||||| Sbjct 17925631 CAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGTTCCA 17925690 Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGT 42925 | ||||| ||| ||| | | ||||| || | |||||| || || || Sbjct 17925691 G---CACCTGGTGCAGCGACCCAAGCACGAGCGCATCATCGAGATCATCCGTGACGCGGT 17925747 Query 42926 GGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCA 42985 || ||| ||| ||||||||||||| | | |||||||| | |||||||||| Sbjct 17925748 GGCGATTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTTAATTTAATCGGCATGAATTG 17925807 Query 42986 CGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGGTC 43044 ||||| |||| | ||||||| ||| ||| || |||| | | | |||| || |||| Sbjct 17925808 TGACCTGATGTCCCAGTACATAGAGTTCGTTGCGGACCGTTTGCTTGTG-GAGTTGGGCG 17925866 Query 43045 TCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGG 43104 | | |||||||||| | ||||||| |||| ||||||| |||||| |||| | Sbjct 17925867 TTGGGAAGATCTACAACACCAAGAACCCCTTCAACTTCATGGAGATGATCTCGCTGGATG 17925926 Query 43105 GCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 | |||||||||||||| |||||| || || || |||||| Sbjct 17925927 GAAAGACCAACTTTTTTGAGAAGAAGGTGGCAGAGTACCAG 17925967 >seq5124 Length=26641161 Score = 291 bits (322), Expect = 2e-73 Identities = 941/1445 (65%), Gaps = 52/1445 (4%) Strand=Plus/Plus Query 243736 CACGCTGAACTGGACGGG-TGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794 |||| ||||||| | || | || | || | ||| || | ||| |||||||| ||||| | Sbjct 10932368 CACGGTGAACTGAATGGCATTCG-CAGCTGGCTTTGTGCGCAGATAGTACATTCCGGTTT 10932426 Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 | || ||| ||||| || | ||| |||| ||||| || | ||| || ||| Sbjct 10932427 TAAGACCAGCTTTCCAGGAGTAAAAGTGTATGGAGGTCAGTTT-TCCAT----AG--TTG 10932479 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 || | | |||| || ||||| ||||| ||||| || | ||| | | || | Sbjct 10932480 GGCTCTGC---CACATGAAT--GTTGAACGACTGACTCTGATCTATGAACGCACCACGGT 10932534 Query 243915 CTGCGGCCATGGTGATGAGGTCCTT--CTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 | |||||||| | || | ||| ||||||| || || || ||||||||| | | Sbjct 10932535 CGGCGGCCATTTTAATCGTGGACTTAACTGAGATTTCCCACAC--CGTCTTGTACA-GAT 10932591 Query 243973 CTTGAGGTG-CTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTG-TGGACGATGAGC 244030 | || || ||||| | || ||||| || | |||||| || |||| |||| | Sbjct 10932592 CGCGAACCCTCTGGGGGATGGCCTCAATGTTTTGGATTGAGCCCCTGCTGGAT-ATGATC 10932650 Query 244031 TGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCG-ACCAGGTGCCT 244089 ||| | ||||| |||| ||||| | ||| || || | | || | || || Sbjct 10932651 TGGTTCTTCATGTCGTCGTCCCACAAGTCCA-GCTCTGTTAGGTCGCGCAACAAATGATG 10932709 Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| |||||||||||||| || ||||| || || | ||| | ||| || | || Sbjct 10932710 GTTGACCACCTGAAACTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGG 10932769 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||||| | || ||||||||| ||| || || || ||||| ||||| || | || Sbjct 10932770 CTCGAAGGATTCATTGTTGCCCATTATTTGAGCTGTAGATGCAGTGGGCATTGGAGCAAC 10932829 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGTTCCAGTCC 244267 |||||| ||| | || |||||| ||| |||| || || | || | | ||||||| Sbjct 10932830 CAGCAGGGAGTTGCGGACACCGTGCTTCTTGATG--GACTCCTTCAGTTTCTGCCAGTCC 10932887 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || | | || || ||| | |||||||||| |||||| | |||||| Sbjct 10932888 CAAAGGTTCGTTGGGACCTTGT---------CCCACATGTCGTACTGCAAAATTCCCTTG 10932938 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTC 244387 || || ||||||||||| ||||| ||| || || ||| ||||||||| | |||||| Sbjct 10932939 CTCACCGGGCTGCCCTCATAGGTTTCGTAAGGGCCTTCGGTCTGGGCCAGTTCACAGCTG 10932998 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 | || | ||| | ||||| ||||| ||||| ||| || |||| | ||| | Sbjct 10932999 GCTTCCAAGGCTCCATAGTAAATGGTTTCGAATATCTGCTGATTCAACAGACCGGCTTCT 10933058 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 | | | |||| | ||| | || ||| |||| || | |||||| | || ||| Sbjct 10933059 TCACTTTCATACGGGAATCGCATGAGAATCAAGGCGTCAGCGAATCCCTGAATACCTATG 10933118 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 || | ||| | ||| | | || || | | || || |||| ||| ||| ||||| Sbjct 10933119 CCCACGGGACGGTGCCTCAAATTTGACTTCCTTGCCTCTGGCAAGGGATAATAGTTGATA 10933178 Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAG 244627 || || | |||||| || || | ||| | || | ||| || ||| || || Sbjct 10933179 TCAATTATCTTGTTTAGATTTCTGGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAA 10933238 Query 244628 TCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTG 244687 || ||| || || || || | |||||| ||||||||| | | Sbjct 10933239 TCATAC--------GTCTTCTCCGGTG-------TGACAAACATGTTGAGGGCAATGGAT 10933283 Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 |||| ||||||||| || | ||| |||| || ||| | || || || ||||| | | Sbjct 10933284 GCCAAGTTGCAGACAGCTATCTCATCCGGCGCGGAGTATTCAACGATTTCCGTGCACAAG 10933343 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || ||||||||||||||||| | | ||| || ||| ||| |||||| ||||||||| Sbjct 10933344 TTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTG 10933403 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCC 244867 |||||||| | || || || || | || || | | || | | ||| ||| Sbjct 10933404 AAGAGCATGTACGGATTTCCAGTTTCCACTTGCGCCTCAATGATGGCATACCACAGGGAT 10933463 Query 244868 CTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCG 244927 |||||| ||||| | | || |||||| |||||| ||||| ||| Sbjct 10933464 TGAGCCTTAACCGTTCGGTTGGCTCGACCCTCTTGCTCGTATTTCTCATACAGCTTTTCG 10933523 Query 244928 AACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCAC 244987 || || |||||| || || | ||||| ||||| ||||||||||| ||| Sbjct 10933524 AATTCATCGCCCCACACATCTTGGAGGCCAGGGCATTTGTGGGGGCACATGAGCGACCAA 10933583 Query 244988 TCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGG 245047 || ||| | ||| || | || ||||||||| ||||| ||||| || || | || || Sbjct 10933584 TCACCGTTGGCCTCCACGCGCTTCATGAAGAGATCGGGTATCCACAGAGCGTAAAACAGA 10933643 Query 245048 TCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107 || | || | | ||| ||| ||| ||||| ||| | || || | || |||||||| Sbjct 10933644 TCGCGGGCGCGATTCTCTTCCTTGCCCGTGTTTTTCTTTAGTTCGAGGAACTCAAAGACA 10933703 Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167 || |||||||||||||| ||| | || | ||| ||||| |||||| |||||||||| Sbjct 10933704 TCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGG 10933763 Query 245168 TCCAC 245172 ||||| Sbjct 10933764 TCCAC 10933768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944278715074240