Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_009818.1 Length=36409 Score E Sequences producing significant alignments: (Bits) Value seq3473 2060 0.0 seq301 845 0.0 >seq3473 Length=3319 Score = 2060 bits (2284), Expect = 0.0 Identities = 1316/1441 (91%), Gaps = 0/1441 (0%) Strand=Plus/Plus Query 29775 CCGGCCAGGCTTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACCTGGACGGTCA 29834 |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1 CCGGCCAGGCGTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACTTGGACCGTCA 60 Query 29835 GCATTGGCACCGACGGCCCGCCCGTAGTCAATGCCCGGATCATCTGGAGGCTCCAGGGCG 29894 |||||||||| |||||||||||||| |||||||| |||||| |||||| ||||||||||| Sbjct 61 GCATTGGCACGGACGGCCCGCCCGTCGTCAATGCGCGGATCGTCTGGACGCTCCAGGGCG 120 Query 29895 AGCCGGACCTGGCCCTGGTCATCACTGGCAATCGCATCATCGCCTGGACGTTCGCGCCGG 29954 |||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 121 AGCCGGACCTGGTCCTGGTCATCACCGGCAATCGCATCATCGCCTGGACCTTCGCGCCGG 180 Query 29955 ACTGGGGCGACAGCATCGTCGAACGCCTGAGCGCATCGACAAATATCCTGCAAAGCGAAT 30014 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 181 ACTGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAAT 240 Query 30015 CGGCCGTGACCCAGCGCCGAGCCATGCGCCTGGCGCCGCGCCGAGAGTTCGAAGCGAACA 30074 | ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| Sbjct 241 CAGCCGTGACCCAGCGCCGGGCTATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACA 300 Query 30075 TGTACGCGGTGGATCGCGAGCGGCAGTTGCTGGACATGACGCTGTTCGGCTGGGGTGCGC 30134 |||||||||| || |||||||||||| | ||||||||||||||||| |||||||| |||| Sbjct 301 TGTACGCGGTAGACCGCGAGCGGCAGCTCCTGGACATGACGCTGTTTGGCTGGGGCGCGC 360 Query 30135 GCATTTGGGCGCTGCCGATCTGGCCTGATATCCAGCTGCTCCACCAGCCGCTGGCGGCCG 30194 | ||||||||||||||||| |||||||||||||| |||||||| | ||||||||||||| Sbjct 361 GAATTTGGGCGCTGCCGATTTGGCCTGATATCCAACTGCTCCAAGAACCGCTGGCGGCCG 420 Query 30195 GGTCGCTGAGCATTCCGTGCGACACGGCCGGCCTCGACTTCCGCGACGGCGGTCTGGCGA 30254 | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 421 GCTCGCTGAACATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTGGCGA 480 Query 30255 TGCTGCGCGGCGAGGACGCTTTTACTTACGAGGTCGTCGAGGTCAAGACGGTGACCGCCA 30314 ||||||||||||||||||| || || || || ||||||||||||||| | ||||||||| Sbjct 481 TGCTGCGCGGCGAGGACGCCTTCACCTATGAAGTCGTCGAGGTCAAGGCAGTGACCGCCG 540 Query 30315 GCGGCCTGGACCTGGTGCGGCCCGTCCAGGCCGCGTGGGGAACTGGCTCGCGACTGTACC 30374 ||||||||||||||| || |||||||||||| | |||| |||||||||||||||||||| Sbjct 541 CCGGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGGTAACTGGCTCGCGACTGTACC 600 Query 30375 CAGTGCGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGC 30434 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CGGTGCGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGC 660 Query 30435 AGTCTGCGCGGGTGTCGTTCCTTGTGATGGAACCCAGCAGTTGGCCCGAGGTGATGCCGG 30494 |||||||||||||||||||||| | ||||| |||||| ||||||||||| ||||||| Sbjct 661 AGTCTGCGCGGGTGTCGTTCCTGATAATGGAGCCCAGCGCCTGGCCCGAGGTAATGCCGG 720 Query 30495 CGACGATGTACCGGGGGCGTCCTGTCCTGGAACAGCGCCCCGACGAAAGCGAAGACCTGA 30554 |||||| ||| ||||||| || || ||||| |||||||| ||||||||||||||||| | Sbjct 721 CGACGACCTACAGGGGGCGGCCAGTGCTGGAGCAGCGCCCGGACGAAAGCGAAGACCTCA 780 Query 30555 CGTCGAGCTATCAGCGCCTGCTGTCCACCCTGGATAACGGCAGCGCCATTCCCCGCGTGA 30614 | || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 781 CCTCCAGCTATCAGCGCCTGCTGTCCACCCTGGACAACGGCAGCGCGATTCCCCGCGTGA 840 Query 30615 CCGACGTCGCCGGCATGGCGCTGCCCGTCATCGGTCATCGCTGGATCGGCATGGGCCGAG 30674 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CCGACGTCGCCGGGATGGCGCTGCCCGTCATCGGTCATCGCTGGATCGGCATGGGCCGAG 900 Query 30675 CCGAACGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTACGCGGTCAGCAGAAGCCGCTGT 30734 |||| |||||||||||||||||||||||||||||||| || || |||||||||||||| | Sbjct 901 CCGAGCGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTGCGAGGCCAGCAGAAGCCGCTAT 960 Query 30735 GGGTGCCGACCCACGCCGACGACCTGACCCTGGTCGCCACCGTCTCGCAGCTGTCCACCG 30794 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 961 GGGTGCCGACCCACGCCGACGACCTGACCCTAGTCGCCACCGTCTCGCAGCTGTCCACTG 1020 Query 30795 CGCTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAATGGTCGGCCGGGCCGTCGCG 30854 ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| Sbjct 1021 CGCTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAATGGGCGACCGGGTCGTCGCG 1080 Query 30855 ATATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGACGCATCCTTNNNNNNNNNN 30914 |||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1081 ATATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGCCGCATTCTCACCAGCACCG 1140 Query 30915 NNNNNNNNNNNNNNNNNNAGCGCCTGGCCATCGACGCCGCCCTGGGCCGGCTGGTCGAGC 30974 ||||| ||||||||||||||||||||||||| |||||||||| Sbjct 1141 AGCTGGACGCCGACACCGAGCGCTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGC 1200 Query 30975 CTGGCGACGTGGCGCGCATTTGTTTCATGGCGCTCTGTAGCGCCGCAAGCGACGTGGTCG 31034 | ||| || |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 1201 CGACCGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCAGCGACGTGGTCG 1260 Query 31035 AGATTGAGCACGTCACCGACAGCGAGGGCGTCGCCACTGCCGCCCTGACGTTCAAGGGGG 31094 ||||||||||||||||||| |||||||||||||| || ||||| ||||| ||||| |||| Sbjct 1261 AGATTGAGCACGTCACCGATAGCGAGGGCGTCGCAACCGCCGCGCTGACATTCAAAGGGG 1320 Query 31095 TTCGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGG 31154 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 TTCGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGG 1380 Query 31155 CTGTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATC 31214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 CTGTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATC 1440 Query 31215 A 31215 | Sbjct 1441 A 1441 Score = 1151 bits (1276), Expect = 0.0 Identities = 730/785 (93%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 33593 GACCGGACGCCTCGGGCGATCACTGTGCGCCGACTGATCGAGGCGCCATATCGCGAACTG 33652 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| Sbjct 2536 GACCGGACGCCTCGGGCGATCACTGTGCGCCGCCTGATCGAGGCACCCTATCGCGAACCT 2595 Query 33653 GCC---GGCGTGATCGATCC-GGCGAATCTCCAGCTCCTGGACGTGTCCGCATCCT-ACC 33707 ||| |||||||||||||| ||| ||||||||||||||||||||| ||| |||| || Sbjct 2596 GCCCCGGGCGTGATCGATCCCGGCAAATCTCCAGCTCCTGGACGTGAGCGCGTCCTTACT 2655 Query 33708 TCGCTGCGCTGGCC-GAGGCGCCGACAAGCTTGTCGCAGAGCTACACCCTGACCGACCGC 33766 | || ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| Sbjct 2656 TGGCCGCGCTGGCCCGAGGCGCCGACCAGCCTGTCGCAGAGCTACACACTGACCGACCGC 2715 Query 33767 GTCGGCAGCTCTGGCGCGTTCGTTGATCGAGGAACCGGGGATTGGTGCCCGACCGGCCTG 33826 ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| || Sbjct 2716 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGACTA 2775 Query 33827 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGGCCGAACGTGGTCACGCTGACCAACGCCAGT 33886 ||||||||||||||||||||||||||||| |||||||| |||||| |||| |||||||| Sbjct 2776 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGTCCGAACGTCGTCACGTTGACGAACGCCAGC 2835 Query 33887 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCTGTGGTTGACGACGAGATAGTCCGGGTC 33946 |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 2836 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCAGTCGTGGACGACGAGATAGTCCGGGTC 2895 Query 33947 GATGCCGTCAACTATGCCAGTGGCACCGTCACCCTGGCGCGCGGCTGCGCCGATACCGTG 34006 ||||| |||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct 2896 GATGCGGTCAACTACGCCAGCGGCACGGTCACCCTCGCGCGCGGCTGCGCCGATACCGTA 2955 Query 34007 CCGGCCAAGCACTTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCGGTGGAC 34066 ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2956 CCGGCCAAGCATCTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCTGTGGAC 3015 Query 34067 GAGACGGTATACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACCAACACCAGCGAG 34126 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3016 GAAACGGTCTACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACGAACACCAGCGAG 3075 Query 34127 GGCCAACTGGCCCCGGCGCTGGCCGCCACCGACAGCCTGACGCTGACCGGGCGCCAAGGT 34186 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 3076 GGCCAACTGGCCCCGGCGCTGGCCGCCACCGACAGCCTCACCCTGACCGGGCGCCAAGGT 3135 Query 34187 AAGCCGTACCCGCCCGGCCAGTTCCGCATCAACGGCAGCGCGTACCCAACGAAGGTCTAC 34246 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 3136 AAGCCGTATCCGCCCGGCCAGTTCCGCATCAACGGCAGCGCGTACCCAACGAAAGTCTAC 3195 Query 34247 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 34306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3196 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 3255 Query 34307 GATACCACTGTCGGCAACATCGGGCCCGAAGATGGGGCGACGGTGACGCTCCAGGTCTAC 34366 |||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||| ||| Sbjct 3256 GATACCACGGTCGGCAACATCGGACCCGAAGATGGGGCGACGGTTACGCTCCTGGT-TAC 3314 Query 34367 AGCGG 34371 ||||| Sbjct 3315 AGCGG 3319 >seq301 Length=948 Score = 845 bits (936), Expect = 0.0 Identities = 478/483 (99%), Gaps = 1/483 (0%) Strand=Plus/Plus Query 6392 CCGCAGACCCGCGAGCAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 6451 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 CCGCAGACCCGCGAACAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 62 Query 6452 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 6511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 122 Query 6512 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 6571 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 182 Query 6572 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACG 6631 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACA 242 Query 6632 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 6691 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 302 Query 6692 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGCACCAAGGAAGAGGTG 6751 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGCACCAAGGAAGAGGTG 362 Query 6752 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTGCCGGGGCTGACCCTG 6811 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTGCCGGGGCTGACCCTG 422 Query 6812 -ACACGGGCATCGAAGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 6870 |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 AACACCGGCATCGAGGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 482 Query 6871 CGA 6873 ||| Sbjct 483 CGA 485 Score = 336 bits (372), Expect = 5e-88 Identities = 196/201 (98%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 7233 AGGAGGTGTGACATGGCCCGCAACCGCGCGCAACAGCTGTGCATCGTCACCTTGGATTAT 7292 |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| Sbjct 749 AGGACGTGTGACATGGCACGCAACCGCGCGCAACAGCTGTGCATCG-CACCTTGGACTAT 807 Query 7293 CAGCGCTTCCTGTTACCCCAGGCTGATGCACTCAAGCTGATAGACATCATGAGTCGAGCC 7352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 808 CAGCGCTTCCTGTTACCCCAGGCTGATGCACTCAAGCTGATAGACATCATGAGTCGAGCC 867 Query 7353 GCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTGGGTTCAAGTACACCGTCGGCGAAGTG 7412 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 868 GCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTGGATTCAAGTACACCGTCGGCGAAGTG 927 Query 7413 CCGGAAGTCGAGTTGACGATA 7433 ||||||||||||||||||||| Sbjct 928 CCGGAAGTCGAGTTGACGATA 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116380118129848