Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq5119 102 6e-17 seq5120 98.7 8e-16 >seq5119 Length=10470090 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||| | ||| || | ||||| ||||| ||||| || || || || || ||||| Sbjct 1985488 TGGGTTCGCGACCATCGAGTTCATCACAAATACTCGGAGACCGATGCGGATCCCCACAAT 1985547 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 ||||||||||| |||| ||||| |||||||| ||||| |||||| ||| |||| || Sbjct 1985548 GCCAACAGGGGATTCTTCTTCTCCCACGTGGGGTGGCTGATGATGCTGAAGCACCCGGAG 1985607 Query 108586 GTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGTGGTAGT 108644 ||| | ||| | ||||| | || ||||||| ||||| ||||||| ||||| Sbjct 1985608 GTGCT-TCGTCGTGGTCGCCAGATCGACATGAGCGACATTCTGGCCGATCCCGTGGTGCG 1985666 Query 108645 GTGGCACACCAAGTACTT 108662 || ||| |||||||| Sbjct 1985667 GTTCCACCAGAAGTACTT 1985684 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| | ||||||||||||||||||||||||||||||||||||| || |||||||| | Sbjct 1986147 TGGCCATGGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTGGGATTACAAGGCAG 1986206 Query 108941 CCGAGTTGGGGAACGAC 108957 | ||| |||| ||| || Sbjct 1986207 CTGAGCTGGGCAACTAC 1986223 >seq5120 Length=17746568 Score = 98.7 bits (108), Expect = 8e-16 Identities = 60/64 (94%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 108887 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGT 108946 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 12539862 TCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTGGGACTACAAGGCAGCCGAGC 12539803 Query 108947 TGGG 108950 |||| Sbjct 12539802 TGGG 12539799 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCA--CCGCCCCGTTCA 108412 || ||||| || ||||| ||||| ||||||| ||||||||||||| | ||| | || Sbjct 12540691 ACAGCCGGAGTGCATCGTCTGTGGTCCCACAAGGCCTACAAGGCCAAGCTGCCAC--TCC 12540634 Query 108413 GGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGC 108472 | | ||||| ||| ||| || |||| ||||||| |||| | ||||| | Sbjct 12540633 GCATCTTCCTCATGCTGTGCCAGTCCCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCC 12540574 Query 108473 TCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACA 108532 || ||| | || |||||||||| | | ||||| ||||| || |||||| || Sbjct 12540573 GTGACCACCGTGTGCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCCCGAC 12540514 Query 108533 GGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 | || |||| ||| | ||| |||| ||||| ||| | ||| ||||||| |||| Sbjct 12540513 GCGGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCCGATGTGA 12540457 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/114 (76%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 108859 GAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTG 108918 || |||| | |||||| ||||| |||| ||||||||||| |||||||||||||| Sbjct 13348747 GAGAACATCTCGGTGGCTATTTTGGCCTTCGGAGAGGGATGGCATAACTACCACCACGTC 13348688 Query 108919 TTCCCCTACGACTACAAGGCCGCCGAGTTGGGGAACGACT---TTAATTTCACC 108969 ||||| | |||||||| | |||||||| || || ||| |||| |||||| Sbjct 13348687 TTCCCTTGGGACTACAAAACGGCCGAGTTCGGAAAATACTCGCTTAACTTCACC 13348634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381748958765856