Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq5123 109 4e-19 seq5121 104 2e-17 seq1295 91.5 1e-13 seq5124 86.0 4e-12 >seq5123 Length=25762168 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| || |||||||| || || || || |||||||||||| Sbjct 6600337 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 6600396 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | ||| ||||||||| | |||| |||||| || || || Sbjct 6600397 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGGGGG 6600456 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| ||||| || |||||| || || |||| || |||||| | || || Sbjct 6600457 ATTCCCTCCTTATCTTGGATTTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCACC 6600516 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || || ||||| || || || || ||||||||| Sbjct 6600517 TCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 6600564 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| || |||||||| || || || || |||||||||||| | Sbjct 6599425 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG--G 6599482 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | ||||||| | ||| ||||| ||| | |||| |||||| || || | Sbjct 6599483 ACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAG 6599542 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| ||||| || |||||| || || |||| || ||||| | || | Sbjct 6599543 GGATTCCCTCCTTATCTTGGATTTTGGCCTTCACGTTTTCAATGGTATCTGAAGGCTCCA 6599602 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || || || ||||| || || ||||| || || || || ||||||||| Sbjct 6599603 CCTCCAAAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAGATTTGCATA 6599652 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| || |||||||| || || || || |||||||||||| | Sbjct 6600109 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG--G 6600166 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | ||||||| | ||| ||||| ||| | |||| |||||| || || | Sbjct 6600167 ACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAG 6600226 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 | ||||| ||||| || |||||| || ||| | || ||||| || | || || Sbjct 6600227 GGATTCCCTCCTTATCTTGGATTTTGGCCTTCACATTCTCAATAGTGTC-CGATGGCTCC 6600285 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | ||| ||||| || || ||||| || || || || ||||||||| Sbjct 6600286 ACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 6600336 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| || |||||||| || || || || |||||||||||| Sbjct 6600793 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 6600852 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | || ||||| || | |||| |||||| || || || Sbjct 6600853 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGG 6600912 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| ||||| || |||||| || || |||| || |||||| | || || Sbjct 6600913 ATTCCCTCCTTATCTTGGATTTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCACC 6600972 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || || ||||| || || || || ||||||||| Sbjct 6600973 TCCAAAGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 6601020 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| || |||||||| || || || || |||||||||||| Sbjct 6598969 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 6599028 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | ||| ||||| ||| | |||| |||||| || || || Sbjct 6599029 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGG 6599088 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 ||||| ||||| || || || || ||| | || ||||| || | || || || Sbjct 6599089 ATTCCCTCCTTATCTTGGATCTTAGCCTTCACATTCTCAATAGTGTC-CGATGGCTCCAC 6599147 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| ||||| || || ||||| || || || || || |||||| Sbjct 6599148 TTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 6599196 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| || |||||||| || || || || |||||||||||| Sbjct 6601021 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 6601080 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | || ||||| || | |||| |||||| || || ||| Sbjct 6601081 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGA 6601140 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||| ||||| || ||| ||| || ||| | || || ||||| || || Sbjct 6601141 ATTCCCTCCTTATCCTGAATCTTGGCCTTCACATTCTCGATGGTATCCGAGGGCTCCACC 6601200 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 || || || || || || || |||| || || ||||| || ||||| || || Sbjct 6601201 TCCAAAGTGATTGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTTGGA 6601253 >seq5121 Length=18748788 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | | || || |||||||| || || || || |||||||| ||| Sbjct 15143751 TGCCACCACGCAGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 15143810 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | |||| || | || || || ||| | ||||||||||| || || | Sbjct 15143811 ACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGG 15143870 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| |||||||| || ||| || || | || || |||||| || | Sbjct 15143871 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAA 15143930 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || ||||| ||||| || || |||||||| ||||| |||||||||||||| Sbjct 15143931 CCTCCAAGGTGATGGTCTTGCCAGTCAGAGTCTTTACGAAAATTTGCATATT 15143982 >seq1295 Length=1233 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| || |||||||| || || || || |||||||||||| Sbjct 831 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 890 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | ||| ||||| ||| | |||| |||||| || || || Sbjct 891 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGG 950 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 ||||| ||||| || || || || ||| | || ||||| || | || || || Sbjct 951 ATTCCCTCCTTATCTTGGATCTTAGCCTTCACATTCTCAATAGTGTC-CGATGGCTCCAC 1009 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| ||||| || || ||||| || || || || ||||||||| Sbjct 1010 TTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 1058 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/231 (70%), Gaps = 7/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| || |||||||| || || || || |||||||||||| | Sbjct 148 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCG--G 205 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || | | ||||||| | ||| ||||| ||| | |||| |||||| || || | Sbjct 206 ACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGG 265 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCT 15126 | ||||| ||| |||| || || || ||| | || ||||| || | || || Sbjct 266 GGATTCCCTCC-TGTCTTGGATCTTAGCCTTCACATTCTCAATAGTGTC-CGATGGCTCC 323 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || | ||| ||||| || || ||||| || || || || ||||||||| Sbjct 324 ACTTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 374 Score = 82.4 bits (90), Expect = 5e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | ||| || |||||||| || || || || |||||||||||| Sbjct 1059 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 1118 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| | ||| ||||||||| | |||| |||||| || || || Sbjct 1119 AGGGTGCGTCCGTCTTCCAGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGGGGG 1178 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCG 15117 ||||| ||||| || |||||| || || |||| || |||||| Sbjct 1179 ATTCCCTCCTTATCTTGGATTTTGGCCTTCACGTTTTCAATGGTATCG 1226 >seq5124 Length=26641161 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || || || || || || || ||||| || || | Sbjct 11019412 CCACCACGCAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 11019353 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | || ||||||||| | |||| |||||| || || ||| Sbjct 11019352 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 11019293 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTAC 15128 |||||||| ||||| ||| ||| ||| ||| |||| |||||||| | || ||| || Sbjct 11019292 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATC-CGATGGTTCGAC 11019234 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | || ||||| || || || || || || || || || ||||| || Sbjct 11019233 CTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 11019183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357369681316340