Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_011611.1 Length=36885 Score E Sequences producing significant alignments: (Bits) Value seq3473 2235 0.0 seq301 1595 0.0 >seq3473 Length=3319 Score = 2235 bits (2478), Expect = 0.0 Identities = 1359/1439 (94%), Gaps = 0/1439 (0%) Strand=Plus/Plus Query 30259 GGCCAGGCGTCGCCGCCGCTGGGTTTCGCCGCCCTGGAGGAACGCACTTGGACGGTCAGC 30318 |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 3 GGCCAGGCGTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACTTGGACCGTCAGC 62 Query 30319 ATTGGCACGGACGGCCCACCCGTCGTCAATGCGCGGATCGTCTGGAAGCTCCAGGGCGAG 30378 ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 63 ATTGGCACGGACGGCCCGCCCGTCGTCAATGCGCGGATCGTCTGGACGCTCCAGGGCGAG 122 Query 30379 CCGGACATGGTCCTGGTCATCACTGGCAACCGGATCATCGCCTGGACGTTCGCGCCGGAC 30438 |||||| |||||||||||||||| ||||| || |||||||||||||| |||||||||||| Sbjct 123 CCGGACCTGGTCCTGGTCATCACCGGCAATCGCATCATCGCCTGGACCTTCGCGCCGGAC 182 Query 30439 TGGGGCGACAGCATCGTCGAACGCCTCAGCGCCTCGACAAATATCCTGCAAAGCGAATCG 30498 |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 183 TGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAATCA 242 Query 30499 GCGGTGACCCAGCGCCGGGCCATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACATG 30558 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 243 GCCGTGACCCAGCGCCGGGCTATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACATG 302 Query 30559 TACGCGGTGGGCCGCGAGCGGCAGCTCCTGGACATGACGCTATTCGGCTGGGGCGCGCGC 30618 |||||||| | |||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 303 TACGCGGTAGACCGCGAGCGGCAGCTCCTGGACATGACGCTGTTTGGCTGGGGCGCGCGA 362 Query 30619 ATTTGGGCGCTGCCGATCTGGCCTGATATCCAGTTGCTCCACCAGCCGCTGGCGGCCGGG 30678 ||||||||||||||||| |||||||||||||| ||||||| | |||||||||||||| Sbjct 363 ATTTGGGCGCTGCCGATTTGGCCTGATATCCAACTGCTCCAAGAACCGCTGGCGGCCGGC 422 Query 30679 TCGCTGAGCATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTAGCGATG 30738 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 423 TCGCTGAACATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTGGCGATG 482 Query 30739 CTGCGCGGCGAGGACGCCTTCAACTATGAGGTCGTCGAGGTCAAGGCAGTGACCGCCGCC 30798 |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 483 CTGCGCGGCGAGGACGCCTTCACCTATGAAGTCGTCGAGGTCAAGGCAGTGACCGCCGCC 542 Query 30799 GGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGGTAACTGGCTCGCGACTGTACCCG 30858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 543 GGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGGTAACTGGCTCGCGACTGTACCCG 602 Query 30859 GTACGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGCAA 30918 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 GTGCGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGCAG 662 Query 30919 TCTGCGCGGGTGTCGTTCCTGGTGATGGAACCCAGCAGTTGGCCCGAGGTGATGCCGGCG 30978 ||||||||||||||||||||| | ||||| |||||| ||||||||||| ||||||||| Sbjct 663 TCTGCGCGGGTGTCGTTCCTGATAATGGAGCCCAGCGCCTGGCCCGAGGTAATGCCGGCG 722 Query 30979 ACGATGTACCGGGCGCGTCCTGTCCTGGAACAGCGCCCGGACGAAAGCGAAGACCTCACT 31038 |||| ||| ||| ||| || || ||||| ||||||||||||||||||||||||||||| Sbjct 723 ACGACCTACAGGGGGCGGCCAGTGCTGGAGCAGCGCCCGGACGAAAGCGAAGACCTCACC 782 Query 31039 TCCAGCTATCAGCGCCTGCTGTCCACCCTGGACAACGGCAGCGCGATTCCCCGCGTGACC 31098 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 783 TCCAGCTATCAGCGCCTGCTGTCCACCCTGGACAACGGCAGCGCGATTCCCCGCGTGACC 842 Query 31099 GACGTCGCCGGCGTGGCGCTGCCCGTCATCGGCCATCGCTGGATCGGTATGGGCCGAGCC 31158 ||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 843 GACGTCGCCGGGATGGCGCTGCCCGTCATCGGTCATCGCTGGATCGGCATGGGCCGAGCC 902 Query 31159 GAGCGGTCGGCGTTCCGTAGCCTGGTCTATGCGCTGCGCGGCCAGCAGAAGCCGCTATGG 31218 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 903 GAGCGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTGCGAGGCCAGCAGAAGCCGCTATGG 962 Query 31219 GTGCCGACCCACGCCGACGACCTGACCCTAGTCGCCACCGTCTCGCAGCTGTCCACCGCG 31278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 963 GTGCCGACCCACGCCGACGACCTGACCCTAGTCGCCACCGTCTCGCAGCTGTCCACTGCG 1022 Query 31279 CTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAACGGCCGGCCGGGCCGTCGCGAT 31338 |||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||| Sbjct 1023 CTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAATGGGCGACCGGGTCGTCGCGAT 1082 Query 31339 ATCCGCATCGAGCTATACGACGGCACGGTCTATCACCGCCGCATCCTCACCAGCACCGAG 31398 |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1083 ATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGCCGCATTCTCACCAGCACCGAG 1142 Query 31399 CTGGACGCCGACACCGAGCGCTTGGCCATCGATGCCGCCCTGGGCCGGCTGGTCGAGCCT 31458 |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 1143 CTGGACGCCGACACCGAGCGCTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGCCG 1202 Query 31459 GGCGACGTGGCGCGCATTTGTTTCATGGCGCTCTGTAGCGCCGCCACCGACGTGGTCGAG 31518 ||| || |||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 1203 ACCGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCAGCGACGTGGTCGAG 1262 Query 31519 ATCGAGCACGTCACTGATAGCGAGGGCGTAGCAACTGCCGCCCTGACGTTCAAGGGAGTT 31578 || ||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| || ||| Sbjct 1263 ATTGAGCACGTCACCGATAGCGAGGGCGTCGCAACCGCCGCGCTGACATTCAAAGGGGTT 1322 Query 31579 CGTGACGATGAGTTTTAACAGCCGCGAACGCTCGCTCGCGGATGGGCAGCCGGTGCGGCT 31638 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1323 CGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGGCT 1382 Query 31639 GTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATCA 31697 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1383 GTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATCA 1441 Score = 1133 bits (1256), Expect = 0.0 Identities = 726/785 (92%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 34075 GACCGGACGCCTCGGGCGATCACTGTGCGCCGACTGATCGAGGCGCCATATCGCGAACTG 34134 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| Sbjct 2536 GACCGGACGCCTCGGGCGATCACTGTGCGCCGCCTGATCGAGGCACCCTATCGCGAACCT 2595 Query 34135 GCC---GGCGTGATCGATCC-GGCGAATCTCCAGCTCCTGGACGTGTCCGCATCCT-ACC 34189 ||| |||||||||||||| ||| ||||||||||||||||||||| ||| |||| || Sbjct 2596 GCCCCGGGCGTGATCGATCCCGGCAAATCTCCAGCTCCTGGACGTGAGCGCGTCCTTACT 2655 Query 34190 TCGCTGCGCTGGCC-GAGGCGCCGACAAGCTTGTCGCAGAGCTACACCCTGACCGACCGC 34248 | || ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| Sbjct 2656 TGGCCGCGCTGGCCCGAGGCGCCGACCAGCCTGTCGCAGAGCTACACACTGACCGACCGC 2715 Query 34249 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGGCTA 34308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2716 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGACTA 2775 Query 34309 CTCGCAGCCGAGCTGCCGCTGGCGGCCGGTCCGAACGTCGTCACGTTGACGAACGCCAGC 34368 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2776 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGTCCGAACGTCGTCACGTTGACGAACGCCAGC 2835 Query 34369 CGGCTGGAGGACGTAGCTGTCGGCCAGGCGGCCGTGGTGGATGACGAAATCGTCCGGGTC 34428 |||||||||||||| ||||||||||||| || || ||||| ||||| || ||||||||| Sbjct 2836 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCAGTCGTGGACGACGAGATAGTCCGGGTC 2895 Query 34429 GATGCGGTCAACTACGCCAGCGGTACTGTCACCCTGGCACGCGGCTGCGCCGATACCGTA 34488 ||||||||||||||||||||||| || |||||||| || ||||||||||||||||||||| Sbjct 2896 GATGCGGTCAACTACGCCAGCGGCACGGTCACCCTCGCGCGCGGCTGCGCCGATACCGTA 2955 Query 34489 CCAGCCAAGCACCTGGCCGGGGCTCGGGTCTGGTTCTATGACACGTTCGAAGCGGTGGAC 34548 || |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 2956 CCGGCCAAGCATCTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCTGTGGAC 3015 Query 34549 GAGACGGTCTACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACCAACACCAGCGAG 34608 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3016 GAAACGGTCTACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACGAACACCAGCGAG 3075 Query 34609 GGCCAGCTCGCCCCGGCGCTGGCCGCCACCGACAGCTTGACGCTGACCGGGCGCCAAGGT 34668 ||||| || ||||||||||||||||||||||||||| | || |||||||||||||||||| Sbjct 3076 GGCCAACTGGCCCCGGCGCTGGCCGCCACCGACAGCCTCACCCTGACCGGGCGCCAAGGT 3135 Query 34669 AAGCCGTACCCGCCCGGCCAGTTTCGCATCAACGGCAGCGCGTACCCGGCCAAGGTCTAC 34728 |||||||| |||||||||||||| ||||||||||||||||||||||| | || |||||| Sbjct 3136 AAGCCGTATCCGCCCGGCCAGTTCCGCATCAACGGCAGCGCGTACCCAACGAAAGTCTAC 3195 Query 34729 GGGGCGTTGTCTGTGAGCTGGGCGATGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 34788 |||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3196 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 3255 Query 34789 GATACCACGGTCGGCAACATCGGGCCCGAAGATGGGGCGACGGTGACGCTCCAGGTCTAC 34848 ||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||| Sbjct 3256 GATACCACGGTCGGCAACATCGGACCCGAAGATGGGGCGACGGTTACGCTCCTGGT-TAC 3314 Query 34849 AGCGG 34853 ||||| Sbjct 3315 AGCGG 3319 >seq301 Length=948 Score = 1595 bits (1768), Expect = 0.0 Identities = 924/948 (97%), Gaps = 2/948 (0%) Strand=Plus/Plus Query 7619 TCCGCAGACCCGCGAACAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGA 7678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2 TCCGCAGACCCGCGAACAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGA 61 Query 7679 GCTGGCCCGCCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTC 7738 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 62 GCTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTC 121 Query 7739 GGAGCCGGCCGAAGACTTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTG 7798 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 122 GGAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTG 181 Query 7799 GTGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCAC 7858 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 182 GTGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCAC 241 Query 7859 CACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGC 7918 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 242 AACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGC 301 Query 7919 GGTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGTTTCATCCGCGTCAAGGAAGAGGT 7978 |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| Sbjct 302 GGTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGCACCAAGGAAGAGGT 361 Query 7979 GAACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTTCCGGGGCTGACCGT 8038 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 362 GAACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTGCCGGGGCTGACCCT 421 Query 8039 GAAC-CCGGCATCGAAGACTTCGCAATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGG 8097 |||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| Sbjct 422 GAACACCGGCATCGAGGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGG 481 Query 8098 CCGACACCATCGCTTTCTGCTGGGCCTCTGGCCTGATCGAGTTCGGTGACCAGGTGCCCG 8157 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 482 CCGACACCATCGCTTTCTGCTGGGCCTCTGGCCTGATCCAGTTCGGTGACCAGGTGCCCG 541 Query 8158 AGGGCGCCATCGAGATCGCCCGTGGGGACGACCAGGTCGTTCGCGAAATCCTCGTGACCA 8217 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 542 AGGGCGCCATCGAGATCGCCCGTGGGGACGACCAGGTCGTTCGCGAAAACCTCGTGACCA 601 Query 8218 ATTCGCGGCACGCATACGACAACGTGTCGCTCCTGGTTCCGGGCGTACCCGAAGCGGCAA 8277 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 ATTCGCGGCACGCTTACGACAACGTGTCGCTCCTGGTTCCGGGCGTACCCGAAGCGGCAA 661 Query 8278 ACCAAACCGAGGGCGGAGACGCACTGGAGTGCTTCATCCGTCTTCTCGCCAAGTACGACA 8337 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 662 ACCAAACCGAGGGCGGGGACGCACTGGAGTGCTTCATCCGTCTTCTCGCCAAGTACGACA 721 Query 8338 GCGCCGCTTTCCAGGTCGCTTATGTGGAGGACGTGTGACATGGCCCGCAACCGCGCGCAA 8397 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 722 GCGCCGCTTTCCAGGTCGCTTATGTGGAGGACGTGTGACATGGCACGCAACCGCGCGCAA 781 Query 8398 CAGCTGTGCATCGTCACCTTGGACTATCAGCGTTTCCTGTTACCCCAGGCCGATGCACTC 8457 ||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 782 CAGCTGTGCATCG-CACCTTGGACTATCAGCGCTTCCTGTTACCCCAGGCTGATGCACTC 840 Query 8458 AAGCTGATAGACATCATGAGTCGAGCCGCAGAGGTTCAGGCCGACTACGCCTCTGGAACT 8517 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 841 AAGCTGATAGACATCATGAGTCGAGCCGCAGAGGTTCAGGCCGACTACGCCTCTGGAGCT 900 Query 8518 GGGTTCAAGTACACCGTAGGCGAAGCGCCGGAAGTCGAGTTGACGGTA 8565 || |||||||||||||| ||||||| ||||||||||||||||||| || Sbjct 901 GGATTCAAGTACACCGTCGGCGAAGTGCCGGAAGTCGAGTTGACGATA 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117903225446936