Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_011613.1 Length=36632 Score E Sequences producing significant alignments: (Bits) Value seq3473 2114 0.0 seq301 845 0.0 >seq3473 Length=3319 Score = 2114 bits (2344), Expect = 0.0 Identities = 1330/1441 (92%), Gaps = 0/1441 (0%) Strand=Plus/Plus Query 29994 CCGGCCAGTCGTCGCCGCCGCTGGGTTTTGCCGCCTTGGAAGAACGCACCTGGACGGTCA 30053 |||||||| |||||||||||||||||||||||||| |||| |||||||| ||||| |||| Sbjct 1 CCGGCCAGGCGTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACTTGGACCGTCA 60 Query 30054 GCATCGGCACCGACGGCCCGCCCGTGGTCAATGCGCGGATCGTCTGGAAGCTCCAGGGCG 30113 |||| ||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| Sbjct 61 GCATTGGCACGGACGGCCCGCCCGTCGTCAATGCGCGGATCGTCTGGACGCTCCAGGGCG 120 Query 30114 AGCCGGACCTGGTGCTGGTCATCACCGGCAATCGGATCATCGCCTGGACGTTCGCCCCGG 30173 ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||| Sbjct 121 AGCCGGACCTGGTCCTGGTCATCACCGGCAATCGCATCATCGCCTGGACCTTCGCGCCGG 180 Query 30174 ACTGGGGCGACAGCATCGTCGAGCGCCTCAGCGCCTCGACAAATATCCTGCAAAGCGAAT 30233 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 181 ACTGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAAT 240 Query 30234 CGGCCGTGACCCAGCGCCGAGCCATGCGCCTGGCGCCGCGCCGGGAGTTCGACGCGAACA 30293 | ||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||| Sbjct 241 CAGCCGTGACCCAGCGCCGGGCTATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACA 300 Query 30294 TGTACGCGGTGGACCGCGAGCGGCAGCTGCTGGACATGACGCTGTTCGGCTGGGGCGCGC 30353 |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 301 TGTACGCGGTAGACCGCGAGCGGCAGCTCCTGGACATGACGCTGTTTGGCTGGGGCGCGC 360 Query 30354 GCATTTGGGCGCTGCCGATCTGGCCTGATATCCAGCTGCTCCAGCAGCCGTTGGCGGCCG 30413 | ||||||||||||||||| |||||||||||||| |||||||| | ||| ||||||||| Sbjct 361 GAATTTGGGCGCTGCCGATTTGGCCTGATATCCAACTGCTCCAAGAACCGCTGGCGGCCG 420 Query 30414 GCTCGCTGAGCATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTAGCGA 30473 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 421 GCTCGCTGAACATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTGGCGA 480 Query 30474 TGCTGCGCGGCGAGGACGCCTTCAACTATGAGGTCGTCGAGGTCAAGACGGTGGCCGCCG 30533 |||||||||||||||||||||||| |||||| ||||||||||||||| | ||| |||||| Sbjct 481 TGCTGCGCGGCGAGGACGCCTTCACCTATGAAGTCGTCGAGGTCAAGGCAGTGACCGCCG 540 Query 30534 CCGGCCTGGACCTGGTCCGCCCCGTCCAGGCCGCCTGGGGAACTGGCTCGCGACTGTACC 30593 |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 541 CCGGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGGTAACTGGCTCGCGACTGTACC 600 Query 30594 CGGTACGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGC 30653 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CGGTGCGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGC 660 Query 30654 AGTCTGCGCGGGTGTCGTTCCTTGTGATGGAACCCAGCAGTTGGCCCGAGGTGATGCCGG 30713 |||||||||||||||||||||| | ||||| |||||| ||||||||||| ||||||| Sbjct 661 AGTCTGCGCGGGTGTCGTTCCTGATAATGGAGCCCAGCGCCTGGCCCGAGGTAATGCCGG 720 Query 30714 CGACGATGTACCGGGGGCGTCCTGTCCTGGAACAGCGCCCGGACGAAAGCGAAGACCTCA 30773 |||||| ||| ||||||| || || ||||| |||||||||||||||||||||||||||| Sbjct 721 CGACGACCTACAGGGGGCGGCCAGTGCTGGAGCAGCGCCCGGACGAAAGCGAAGACCTCA 780 Query 30774 CCTCTAGCTATCAGCGCCTGCTGTCCACCCTGGACAACGGCAGCGCCATTCCGCGCGTGA 30833 |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 781 CCTCCAGCTATCAGCGCCTGCTGTCCACCCTGGACAACGGCAGCGCGATTCCCCGCGTGA 840 Query 30834 CTGACGTCGCCGGGATGGCGCTGCCGGTCTTGGGGCATCGCTGGATCGGCATGGGCCGAG 30893 | ||||||||||||||||||||||| ||| | || ||||||||||||||||||||||||| Sbjct 841 CCGACGTCGCCGGGATGGCGCTGCCCGTCATCGGTCATCGCTGGATCGGCATGGGCCGAG 900 Query 30894 CCGAGCGGTCGGCGTTCCGTAGCCTGGTCTATGCGCTGCGCGGCCAGCAGAAGCCGCTAT 30953 ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| Sbjct 901 CCGAGCGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTGCGAGGCCAGCAGAAGCCGCTAT 960 Query 30954 GGGTGCCGACCCACGCCGACGACCTGACGCTTGTCGGAACCGTGTCCCAGCTGGCCACCG 31013 |||||||||||||||||||||||||||| || |||| ||||| || |||||| |||| | Sbjct 961 GGGTGCCGACCCACGCCGACGACCTGACCCTAGTCGCCACCGTCTCGCAGCTGTCCACTG 1020 Query 31014 CGCTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAACGGCCGGCCGGGCCGTCGCG 31073 |||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||| Sbjct 1021 CGCTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAATGGGCGACCGGGTCGTCGCG 1080 Query 31074 ACATCCGCATCGAGCTGTACGACGGCACGGTCTATCACCGCCGCATCCTCACCAGNNNNN 31133 | |||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1081 ATATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGCCGCATTCTCACCAGCACCG 1140 Query 31134 NNNNNNNNNNNNACACCGAGCGCCTGGCCATCGACGCCGCCCTGGGCCGGCTGGTCGAGC 31193 ||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 1141 AGCTGGACGCCGACACCGAGCGCTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGC 1200 Query 31194 CTGGTGACGTGGCGCGCATTTGTTTCATGGCGCTCTGTAGCGCCGCCACCGACGTGGTCG 31253 | || || |||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 1201 CGACCGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCAGCGACGTGGTCG 1260 Query 31254 AGATCGAGCACGTCACTGATAGCGAGGGCGTAGCAACTGCCGCCCTGACGTTCAAAGGGG 31313 |||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||||| Sbjct 1261 AGATTGAGCACGTCACCGATAGCGAGGGCGTCGCAACCGCCGCGCTGACATTCAAAGGGG 1320 Query 31314 TTCGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGG 31373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 TTCGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGG 1380 Query 31374 CTGTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATC 31433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 CTGTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATC 1440 Query 31434 A 31434 | Sbjct 1441 A 1441 Score = 1133 bits (1256), Expect = 0.0 Identities = 726/785 (92%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 33812 GACCGGACGCCTCGGGCGGTCACCGTGCGGCGTCTGATCGAGGCGCCATATCGCGAACTG 33871 |||||||||||||||||| |||| ||||| || ||||||||||| || |||||||||| Sbjct 2536 GACCGGACGCCTCGGGCGATCACTGTGCGCCGCCTGATCGAGGCACCCTATCGCGAACCT 2595 Query 33872 GCC---GGCGTGATCGATCC-GGCGAATCTCCAGCTCCTGGACGTGTCCGCCTCGTATCT 33927 ||| |||||||||||||| ||| ||||||||||||||||||||| ||| || | || Sbjct 2596 GCCCCGGGCGTGATCGATCCCGGCAAATCTCCAGCTCCTGGACGTGAGCGCGTCCTTACT 2655 Query 33928 TG-CCGCCTTGGCC-GAGGCGCCGACGAGCCTGTCGCAGAGCTACACCTTGACCGACCGC 33985 || |||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 2656 TGGCCGCGCTGGCCCGAGGCGCCGACCAGCCTGTCGCAGAGCTACACACTGACCGACCGC 2715 Query 33986 GTCGGCAGTTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGACTA 34045 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2716 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGACTA 2775 Query 34046 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGCCCGAACGTCGTCACGTTGACGAACGCCACC 34105 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 2776 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGTCCGAACGTCGTCACGTTGACGAACGCCAGC 2835 Query 34106 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCTGTGGTGGACGACGAGATAGTCCGGGTC 34165 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 2836 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCAGTCGTGGACGACGAGATAGTCCGGGTC 2895 Query 34166 GATGCCGTCAACTATGCCAGTGGCACCGTCACCCTGGCGCGCGGCTGCGCCGATACCGTG 34225 ||||| |||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct 2896 GATGCGGTCAACTACGCCAGCGGCACGGTCACCCTCGCGCGCGGCTGCGCCGATACCGTA 2955 Query 34226 CCGGCCAAGCACTTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCGGTGGAC 34285 ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2956 CCGGCCAAGCATCTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCTGTGGAC 3015 Query 34286 GAGACGGTATACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACCAACACCAGCGAG 34345 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3016 GAAACGGTCTACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACGAACACCAGCGAG 3075 Query 34346 GGCCAGCTCGCCCCGGCGCTGGCCGCCACCGACAGCCTCACTCTGACCGGGCGCCAGGGC 34405 ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 3076 GGCCAACTGGCCCCGGCGCTGGCCGCCACCGACAGCCTCACCCTGACCGGGCGCCAAGGT 3135 Query 34406 AAGCCGTATCCGCCCGGCCAGTTCCGAATCAACGGCAGCGCGTACCCGACGAAGGTCTAC 34465 |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| Sbjct 3136 AAGCCGTATCCGCCCGGCCAGTTCCGCATCAACGGCAGCGCGTACCCAACGAAAGTCTAC 3195 Query 34466 GGAGCGCTGTCGGTGAGCTGGGCGATGCGCGACCGCATCGGCCAGGCCGACCAGTTGATC 34525 || |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 3196 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 3255 Query 34526 GATACCACTGTCGGCAACATCGGGCCCGAAGATGGGGCGACGGTGACGCTCCAGGTCTAC 34585 |||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||| ||| Sbjct 3256 GATACCACGGTCGGCAACATCGGACCCGAAGATGGGGCGACGGTTACGCTCCTGGT-TAC 3314 Query 34586 AGCGG 34590 ||||| Sbjct 3315 AGCGG 3319 >seq301 Length=948 Score = 845 bits (936), Expect = 0.0 Identities = 478/483 (99%), Gaps = 1/483 (0%) Strand=Plus/Plus Query 6882 CCGCAGACCCGCGAGCAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 6941 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 CCGCAGACCCGCGAACAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 62 Query 6942 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 7001 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 122 Query 7002 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 7061 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 182 Query 7062 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACG 7121 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACA 242 Query 7122 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 7181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 302 Query 7182 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGCACCAAGGAAGAGGTG 7241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGCACCAAGGAAGAGGTG 362 Query 7242 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTGCCGGGGCTGACCCTG 7301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTGCCGGGGCTGACCCTG 422 Query 7302 -ACACGGGCATCGAAGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 7360 |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 AACACCGGCATCGAGGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 482 Query 7361 CGA 7363 ||| Sbjct 483 CGA 485 Score = 342 bits (378), Expect = 1e-89 Identities = 197/201 (98%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 7723 AGGAGGTGTGACATGGCCCGCAACCGCGCGCAACAGCTGTGCATCGTCACCTTGGACTAT 7782 |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 749 AGGACGTGTGACATGGCACGCAACCGCGCGCAACAGCTGTGCATCG-CACCTTGGACTAT 807 Query 7783 CAGCGCTTCCTGTTACCCCAGGCTGATGCACTCAAGCTGATAGACATCATGAGTCGAGCC 7842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 808 CAGCGCTTCCTGTTACCCCAGGCTGATGCACTCAAGCTGATAGACATCATGAGTCGAGCC 867 Query 7843 GCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTGGGTTCAAGTACACCGTCGGCGAAGTG 7902 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 868 GCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTGGATTCAAGTACACCGTCGGCGAAGTG 927 Query 7903 CCGGAAGTCGAGTTGACGATA 7923 ||||||||||||||||||||| Sbjct 928 CCGGAAGTCGAGTTGACGATA 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117093674709072