Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5124 291 7e-74 seq5123 82.4 7e-11 >seq5124 Length=26641161 Score = 291 bits (322), Expect = 7e-74 Identities = 949/1461 (65%), Gaps = 46/1461 (3%) Strand=Plus/Minus Query 123235 CCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCA 123291 ||||||| | || | ||| || | | ||| | || |||||||| |||||| || Sbjct 10933803 CCATGCTCAGGGTCTTCAACAATGTGGCGCGTTATGTGGACCAGGGAGGCGGCAAGCGTC 10933744 Query 123292 AAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATT 123351 || || | || || || || || || |||||| ||||| | || || | | Sbjct 10933743 CCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTCCTCGAAC 10933684 Query 123352 TAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGG 123411 |||| |||| ||| |||||| || ||||||||| |||| |||||| | ||| Sbjct 10933683 TAAAGAAAAACACGGGCAAGGAAGAGAATCGCGCCCGCGATCTGTTTTACGCTCTGTGGA 10933624 Query 123412 TACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCG 123471 |||||||| | || ||| ||||| | | | |||| | |||||||||||||| ||| Sbjct 10933623 TACCCGATCTCTTCATGAAGCGCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCC 10933564 Query 123472 ATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAAT 123531 | || || ||| | || || | ||| || | || || || |||| | | ||| Sbjct 10933563 ACAAATGCCCTGGCCTCCAAGATGTGTGGGGCGATGAATTCGAAAAGCTGTATGAGAAAT 10933504 Query 123532 ACGAGCGCGAAGG------CAAACA---GGTTAGTCAGGTTCCGGCAC-GTGATTTGTTC 123581 |||||| || || ||| | ||||| ||| || | | ||| | || Sbjct 10933503 ACGAGCAAGAGGGTCGAGCCAACCGAACGGTTA---AGGCTCAATCCCTGTGGTATGCC- 10933448 Query 123582 AAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCC 123641 || || || | ||||| ||||| |||| ||||||||||||| ||| ||||| Sbjct 10933447 ------ATCATTGAGGCGCAAGTGGAAACTGGAAATCCGTACATGCTCTTCAAGGACGCT 10933394 Query 123642 TGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCC 123701 ||||||||||| | ||| ||| || | || || || || || || || | ||| | Sbjct 10933393 TGCAACAGGAAGAGCAACCAGCAGAATGTTGGCACCATCAAGTGCAGCAACTTGTGCACG 10933334 Query 123702 GAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGC 123761 ||||| | |||||| || | ||| | | || || || || ||||| || ||| | Sbjct 10933333 GAAATCGTTGAATACTCCGCGCCGGATGAGATAGCTGTCTGCAACTTGGCATCCATTGCC 10933274 Query 123762 GTGAATCGTTGCGTCGAAAACGGCG----CTTTTAATTTCCAAACGCTCAAACGCATAAC 123817 | || | ||| | | ||| | | | | ||||| | | |||||| | || Sbjct 10933273 CTCAACATGTTTGTC-ACACCGGAGAAGACGTATGATTTCAAGAAGCTCAAGGAAGTCAC 10933215 Query 123818 AAAAACTGTAGTAA--AGAATT-TGAACAAAATTATCGATGTTAATTTTTATCCTTTGGA 123874 || | |||| | |||| | | ||||| || || ||| | || | |||||| ||| Sbjct 10933214 CAAGA---TAGTTACCAGAAATCTAAACAAGATAATTGATATCAACTATTATCCCTTGCC 10933158 Query 123875 GGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGC 123934 || || | ||| ||||||| ||| | || || || | || ||||| || || || Sbjct 10933157 AGAGGCAAGGAAGTCAAATTTGAGGCACCGTCCCGTGGGCATAGGTATTCAGGGATTCGC 10933098 Query 123935 CGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATAC 123994 ||||| || | | |||| | ||||| ||||| || ||||| || | ||| Sbjct 10933097 TGACGCCTTGATTCTCATGCGATTCCCGTATGAAAGTGAAGAAGCCGGTCTGTTGAATCA 10933038 Query 123995 GCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAAT 124054 ||| ||| |||||| ||||| || || || ||||| || ||||| ||||| || | | Sbjct 10933037 GCAGATATTCGAAACCATTTACTATGGAGCCTTGGAAGCCAGCTGTGAACTGGCCCAGAC 10932978 Query 124055 TCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGA 124114 | ||| | ||||||| || | ||||||||||| |||| || |||||||||||||| Sbjct 10932977 CGAAGGCCCTTACGAAACCTATGAGGGCAGCCCGGTGAGCAAGGGAATTTTGCAGTACGA 10932918 Query 124115 CATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATC 124174 ||||||| | || || || | ||||||||| | || | ||| Sbjct 10932917 CATGTGGGACAAGGTCCCAACGAACCTTTGGGACTGGCAGAAACTGAAGGAGTCCATCAA 10932858 Query 124175 GACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCA 124234 || ||||||| | || ||||| ||| |||| || ||||| || ||| | || ||||| Sbjct 10932857 GAAGCACGGTGTCCGCAACTCCCTGCTGGTTGCTCCAATGCCCACTGCATCTACAGCTCA 10932798 Query 124235 AATTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGT 124294 ||| | || ||||| |||||||||||||| | || | || | ||| | ||||| Sbjct 10932797 AATAATGGGCAACAATGAATCCTTCGAGCCCTATACCACGAACATATACACCAGGCGAGT 10932738 Query 124295 GTTAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAA 124354 | ||||||| ||||| ||| | || ||||||||| || |||| | | | | | Sbjct 10932737 TCTGTCCGGCGAGTTTCAGGTGGTCAACCATCATTTGTTGCGCGACCTAACAGAGCTGGA 10932678 Query 124355 TTTGTACGATGAAAACATGCGCAACGAAATTAT-TGCGGCCGGTGGCAGCGTGCAGCGCA 124413 |||| || || ||||| ||| | || || | | || || ||| | || || Sbjct 10932677 CTTGTGGGACGACGACATGAAGAACCAGATCATATCCAGCAGG-GGCTCAATCCAAAACA 10932619 Query 124414 TCGCTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAA 124469 | | | || || | || | |||||||| || ||||||||||| | | Sbjct 10932618 TTGAGGCCATCCCCCAGAGGGTTCGCGATCTGTACAAGACGGTGTGGGAAATCTCAGTTA 10932559 Query 124470 AATAAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCT 124529 | | ||||||| ||||||||| |||||| || |||| || ||||| ||||| || Sbjct 10932558 AGTCCACGATTA----AAATGGCCGCCGACCGTGGTGCGTTCATAGATCAGAGTCAGTCG 10932503 Query 124530 TTTAACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCG 124589 || ||| | ||| || || |||| ||| | ||||| ||||||| | || | Sbjct 10932502 TTCAACATTCATGTGGCAGAGCCCAACTATGGAAAACTGACCTCCATACACTTTTACTCC 10932443 Query 124590 TGGAGCAGC-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGC 124648 |||| ||| || || ||||| || ||||| || | | || || || || || |||| Sbjct 10932442 TGGA-AAGCTGGTCTTAAAACCGGAATGTACTATCTGCGCACAAAGCCAGCTGCGAATGC 10932384 Query 124649 CATTCAATTTACCGTCGACAA 124669 |||||| || ||||| |||| Sbjct 10932383 CATTCAGTTCACCGTGAACAA 10932363 >seq5123 Length=25762168 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||||||||| | | ||| | |||| || || ||||| ||||| || |||||| Sbjct 6598282 ATTCCTCCGCGGAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGGATGTTGTAATCG 6598341 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | ||||| || ||| | |||| || ||||| || || Sbjct 6598342 GACAAGGTGCGTCCATCCTCGAGCTGTTTGCCGGCGAAAATCAGACGCTGCTGATCTGGG 6598401 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || ||||| || || || | || | ||||| || | ||| Sbjct 6598402 GGGATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCC 6598461 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | || ||||| || || || || || || |||||||| Sbjct 6598462 ACTTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTGCAT 6598511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451974249195040