Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5122 102 1e-16 >seq5122 Length=22589142 Score = 102 bits (112), Expect = 1e-16 Identities = 168/240 (70%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 175928 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 175987 ||||| || ||| | | || || ||||||||||| | ||||||||| |||||||| ||| Sbjct 4847008 TCTTTACCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTGATGTTG 4846949 Query 175988 TTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 176046 || | |||| | | | | |||| || || || || ||| || ||||| || || || Sbjct 4846948 TTGGCACCCACAAAATTCTGGGCCAGATTCACGATTGTCATCTGC-AGGGATACCTCTCC 4846890 Query 176047 GTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCATC 176106 ||| |||||||||||| | || ||||| | | | | ||| || ||||||| |||| Sbjct 4846889 GTGGTGGTAGGCCGACATCTCTGCCACCGATCCGGATAGCTGGGCTACCTTCACCTCACG 4846830 Query 176107 CTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGTC 176166 |||| ||| | | ||||| | |||| || || | ||| ||||| | ||| || Sbjct 4846829 CTTGTCGTTTCTCTTAAAGCAAGTGAACATCACTTTCCGCTGACCCGGCTTTAAGCCATC 4846770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613467904863840