Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5122 248 1e-60 seq5124 179 6e-40 >seq5122 Length=22589142 Score = 248 bits (274), Expect = 1e-60 Identities = 549/810 (68%), Gaps = 24/810 (3%) Strand=Plus/Minus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| |||||||| |||||||||||||| || |||| || || |||||||| ||| Sbjct 17925955 CACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGCGAGATCATCTCCATGAAGTTGAA 17925896 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| || ||| |||| || || | || | ||||| | ||| || || Sbjct 17925895 GGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAACTCCACAAGCAAACGGTCCGCAAC 17925836 Query 159763 AAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || || ||||| ||||| | ||||| || || || | | ||||||| || || Sbjct 17925835 GAACTCTATGTACTGGGACATCAGGTCACAATTCATGCCGATTAAATTAACGGGCAGGGC 17925776 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGTT 159881 || | || ||||||| ||||||| | ||||| || | |||| ||| || || | Sbjct 17925775 ATCGGTGAGGAACTCCTGCTCAATCGCCACCGCGTCACGGATGATCT-CGATGATGCGCT 17925717 Query 159882 CGTACCCCGGCTTGCC-CAAAATGTGGTCCTTAAACAGGAGGCACG-CAAAGTCGCAGTG 159939 ||| | || | || || | ||| || |||| || |||| ||||||||||||| Sbjct 17925716 CGTGCTTGGG-TCGCTGCACCAGGTG---CTGGAACATCAG-CACGGCAAAGTCGCAGTG 17925662 Query 159940 CAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACG 159999 || |||||||| |||||||| | ||||||||| | | | || || ||||| | || || Sbjct 17925661 CAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGTCCAGGCATTAGACCGCG 17925602 Query 160000 CGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGC 160059 | || ||||| ||||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 17925601 CTTCTTAAGCCAGAAAATGGATGCAAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGC 17925542 Query 160060 AAACGCCACGAGCCTCTCACCAAAAGAGGC---GTTGGTGTCATGGGTCCACCTTTTGGC 160116 ||| || | || | ||| || ||| ||| |||| | | |||| ||| Sbjct 17925541 AAAGGCGATGATACGCTCCCCGAAATTGGCAGACTTGGAG---GAGATCCAGGACAGGGC 17925485 Query 160117 CCATTCAGCCTT---CTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTC 160173 ||| || ||||| |||| | || |||||| |||| ||||| |||| || Sbjct 17925484 CCAGTCTGCCTTGCGCTTTAC--AGC-CGGCATCGTTTCGATAGCGTTGAACAGGTACTC 17925428 Query 160174 CTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCAC 160233 ||| ||| |||| ||| ||| | |||||| |||||| || | |||||| Sbjct 17925427 GCGCTGGTTCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAGTGCAC 17925368 Query 160234 ATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACTGCACCTCCTG 160293 || || ||||| ||||| ||| |||||| | |||||| |||||||||||| Sbjct 17925367 GTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGTGCCTCCGTGACCTGCACCTCCTG 17925308 Query 160294 TGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAA 160353 |||| | | ||||||| | || || | || |||| ||| || |||||||||| Sbjct 17925307 ACTGAAGCGCTCCACCAGATTCTCGTTTACGATGCCATCGGAGGCGGCGAAGAAAGCCAG 17925248 Query 160354 CACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTC 160413 |||||| ||||||||||| | |||||| | || |||| | ||||| || | ||| Sbjct 17925247 CACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGTC---GGTGCCAGTCAGTAAGGTC 17925191 Query 160414 TTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 | || |||||| ||||| || || |||| Sbjct 17925190 CTTGGACAAATCCACCTCCTCGACGGTCCA 17925161 >seq5124 Length=26641161 Score = 179 bits (198), Expect = 6e-40 Identities = 345/501 (69%), Gaps = 6/501 (1%) Strand=Plus/Plus Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGT 203891 ||||| |||||| ||| |||||||||||||| ||| | || ||| | | | |||||||| Sbjct 10932355 CCTTCTTCTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGT 10932414 Query 203892 ACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA 203951 |||| ||||| || || || | ||| ||| | ||| ||||| | |||||| | Sbjct 10932415 ACATTCCGGTTTTAAGACCAGCTTTCCAGGAGTAAAAGTGTATGGAGGTCAGTTTTCCAT 10932474 Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGAT 204011 |||||| || |||| |||||||| | ||||| || || || ||||| | | || | Sbjct 10932475 AGTTGGGCTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCACCACGGT 10932534 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 | |||||||| || || ||| ||| || || ||||||||||||||| ||| || | Sbjct 10932535 CGGCGGCCATTTTAATCGTGGACTTAACTGAGATTTCCCACACCGTCTTGTACAGATCGC 10932594 Query 204072 TGGTGTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCT- 204129 || || | | | | | || | ||| ||||| || || || | ||| Sbjct 10932595 GAACCCTCTGGGGGATGGCCT-CAATGTTTTGGATTGAGCCCCTGCTGGATATGA-TCTG 10932652 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAAC-CTGATCAGCTCCCGCACCAGGTGGGGGT 204188 || || | || || |||||| | ||| | ||| | || || |||| || || ||| Sbjct 10932653 GTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCTG-TTAGGTCGCGCAACAAATGATGGT 10932711 Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 ||| | |||||| || |||||||| || | | |||| | | ||| |||| | || | Sbjct 10932712 TGACCACCTGAAACTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCT 10932771 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 |||| | || |||||||| | || ||||| || || |||||||| ||||| | | Sbjct 10932772 CGAAGGATTCATTGTTGCCCATTATTTGAGCTGTAGATGCAGTGGGCATTGGAGCAACCA 10932831 Query 204309 GCAGGGAGTTGCGCACACCGT 204329 ||||||||||||| ||||||| Sbjct 10932832 GCAGGGAGTTGCGGACACCGT 10932852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795104270309440