Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5123 120 1e-21 seq5124 111 6e-19 seq1295 111 6e-19 >seq5123 Length=25762168 Score = 120 bits (132), Expect = 1e-21 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || ||| | || || || | || Sbjct 6599651 ATGCAAATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTTTGGAGGTGGAGCCTTCA 6599592 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||||| | || ||||| ||||||||||| ||||| ||||| ||||| Sbjct 6599591 GATACCATTGAAAACGTGAAGGCCAAAATCCAAGATAAGGAGGGAATCCCTCCAGATCAG 6599532 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || ||||| ||||| ||| | || ||| | ||||| || Sbjct 6599531 CAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTACAAC 6599472 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 6599471 ATCCAGAAGGAGTCGACCCTTCACTTGGT 6599443 Score = 116 bits (128), Expect = 1e-20 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || || || || || |||| Sbjct 6600335 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCATCG 6600276 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || ||||| ||||||||||| ||||| ||||| ||||| Sbjct 6600275 GACACTATTGAGAATGTGAAGGCCAAAATCCAAGATAAGGAGGGAATCCCTCCAGATCAG 6600216 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || ||||| ||||| ||| | || ||| | ||||| || Sbjct 6600215 CAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTACAAC 6600156 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 6600155 ATCCAGAAGGAGTCGACCCTTCACTTGGT 6600127 Score = 111 bits (122), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || || || || || |||| Sbjct 6598739 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCATCG 6598680 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || || || ||||||||||| ||||| ||||| ||||| Sbjct 6598679 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGATAAGGAGGGAATCCCTCCAGATCAG 6598620 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || ||||| ||||| ||| | || ||| | ||||| || Sbjct 6598619 CAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTACAAC 6598560 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 6598559 ATCCAGAAGGAGTCGACCCTTCACTTGGT 6598531 Score = 111 bits (122), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || ||| | || || || | || Sbjct 6599879 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTGGAGCCTTCC 6599820 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||||| | || || ||||| |||||||| ||||||||||| ||||| Sbjct 6599819 GATACCATTGAAAACGTGAAGGCCAAGATTCAGGATAAGGAGGGAATTCCTCCAGATCAG 6599760 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || || || || |||||| | ||| | | || ||||| Sbjct 6599759 CAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGACGCACTCTTTCTGACTATAAC 6599700 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 6599699 ATACAGAAGGAGTCGACCCTTCACTTGGT 6599671 Score = 111 bits (122), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || ||| | || || || | || Sbjct 6600563 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTGGAGCCTTCC 6600504 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||||| | || ||||| ||||||||||| ||||| || || ||||| Sbjct 6600503 GATACCATTGAAAACGTGAAGGCCAAAATCCAAGATAAGGAGGGAATCCCCCCAGATCAG 6600444 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || ||||| ||||| ||| | || || | ||||| || Sbjct 6600443 CAGCGTCTGATTTTCGCTGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 6600384 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 6600383 ATCCAGAAGGAGTCGACCCTTCACTTGGT 6600355 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || || || || || |||| Sbjct 6599195 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 6599136 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || || || ||||||||||| ||||| ||||| ||||| Sbjct 6599135 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGATAAGGAGGGAATCCCTCCAGATCAG 6599076 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || ||||| ||||| ||| | || || | ||||| || Sbjct 6599075 CAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 6599016 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 6599015 ATCCAGAAGGAGTCGACCCTTCACTTGGT 6598987 Score = 102 bits (112), Expect = 3e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || || || || || |||| Sbjct 6599423 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCATCG 6599364 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || || || ||||||||||| ||||| ||||| ||||| Sbjct 6599363 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGATAAGGAGGGAATCCCTCCAGATCAG 6599304 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || || || || |||||| | || || | ||||| || Sbjct 6599303 CAGCGTCTGATTTTCGCCGGCAAGCAGCTCGAGGATGGACGCACCCTGTCCGATTACAAC 6599244 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 6599243 ATCCAGAAGGAGTCGACCCTTCACTTGGT 6599215 Score = 98.7 bits (108), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || ||| | || || || | || Sbjct 6601019 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACTTTGGAGGTGGAGCCTTCC 6600960 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||||| | || ||||| ||||||||||| ||||| || || ||||| Sbjct 6600959 GATACCATTGAAAACGTGAAGGCCAAAATCCAAGATAAGGAGGGAATCCCCCCAGATCAG 6600900 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || || ||||| ||| | || || | ||||| || Sbjct 6600899 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGATTACAAC 6600840 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 6600839 ATCCAGAAGGAGTCGACCCTTCACTTGGT 6600811 Score = 93.3 bits (102), Expect = 2e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || || ||| | || || || | || Sbjct 6600107 ATGCAGATCTTCGTGAAGACCTTGACTGGAAAGACAATCACTTTGGAGGTGGAGCCCTCG 6600048 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || | | || || ||||| |||||||| ||||||||||| ||||| Sbjct 6600047 GATACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATTCCTCCAGATCAG 6599988 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || || ||||| ||| | || || | ||||| || Sbjct 6599987 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGATTACAAC 6599928 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 6599927 ATCCAGAAGGAGTCGACCCTTCACTTGGT 6599899 Score = 91.5 bits (100), Expect = 6e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || ||||||| || || || ||| | || || || | || Sbjct 6601248 AATGCAGATCTTTGTGAAGACCTTGACTGGAAAGACAATCACTTTGGAGGTGGAGCCCTC 6601189 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||| || | | || || ||||| |||||||| ||||||||||| ||||| Sbjct 6601188 GGATACCATCGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATTCCTCCAGATCA 6601129 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || || | || || || || ||||| ||| | || || | ||||| || Sbjct 6601128 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGATTACAA 6601069 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 6601068 CATCCAGAAGGAGTCGACCCTTCACTTGGT 6601039 >seq5124 Length=26641161 Score = 111 bits (122), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || |||||||| || || || || || || || |||||||| || ||| |||| Sbjct 11019186 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCATCG 11019245 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| || ||||| || || |||||||||||||| ||||| Sbjct 11019246 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 11019305 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || |||||||| | || | | || ||||| Sbjct 11019306 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCTGACTATAAC 11019365 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 ||| | ||||| | || || ||||| || Sbjct 11019366 ATTCAGAAGGAGTCCACTCTGCACTTGGT 11019394 >seq1295 Length=1233 Score = 111 bits (122), Expect = 6e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || || || || || |||| Sbjct 601 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCATCG 542 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || || || ||||||||||| ||||| ||||| ||||| Sbjct 541 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGATAAGGAGGGAATCCCTCCAGATCAG 482 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || ||||| ||||| ||| | || ||| | ||||| || Sbjct 481 CAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTACAAC 422 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 421 ATCCAGAAGGAGTCGACCCTTCACTTGGT 393 Score = 107 bits (118), Expect = 8e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || || || || || || |||| Sbjct 1057 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCATCG 998 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | ||||| | | || || || ||||||||||| ||||| ||||| ||||| Sbjct 997 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGATAAGGAGGGAATCCCTCCAGATCAG 938 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || ||||| ||||| ||| | || || | ||||| || Sbjct 937 CAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAAC 878 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || |||||||| || Sbjct 877 ATCCAGAAGGAGTCGACCCTTCACTTGGT 849 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 ||||| ||||||||||| ||||| || || ||||| || ||| | |||||| | || || Sbjct 1201 AAAATCCAAGATAAGGAGGGAATCCCCCCAGATCAGCAGCGTCTGATTTTCGCTGGCAAG 1142 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||||| ||||| ||| | || || | ||||| || || | ||||| | || |||||| Sbjct 1141 CAACTGGAAGACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCGACCCTTCAC 1082 Query 391254 TTAGT 391258 || || Sbjct 1081 TTGGT 1077 Score = 84.2 bits (92), Expect = 9e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || ||| | || || || | || Sbjct 146 ATGCAGATCTTCGTGAAGACGCTGACTGGCAAGACCATCACTTTGGAGGTGGAGCCTTCA 87 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||||| | || ||||||||||||||||| ||||| ||||| ||||| Sbjct 86 GATACCATTGAAAACGTGAAGGCCAAAATTCAAGATAAGGAGGGAATCCCTCCAGATCAG 27 Query 391170 CAACGTTTAATTTT 391183 || |||| | |||| Sbjct 26 CAGCGTTCATTTTT 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975588691617392