Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq5120 111 1e-18 seq5122 86.0 5e-11 >seq5120 Length=17746568 Score = 111 bits (122), Expect = 1e-18 Identities = 181/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 518512 || ||||||| ||||| || || || ||| ||||| || | | |||||| || Sbjct 10593724 AAGGGCCAGTGCTTCATGTCCGACTGCACAGCGGCGTCATCGAACTTGCGACCAATCAAG 10593665 Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 || || || || || || || | ||| || || || || | || | ||||| || ||| Sbjct 10593664 CGCTTGGCGTCGAAGATCGTCTGGGTCGGGTTCATCGCCACCTGGTTCTTGGCGGCGTCT 10593605 Query 518573 CCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGA 518632 || |||||| | || || || || || | |||||| |||||||| || |||||||| || Sbjct 10593604 CCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGAGTGGTACGATTACCCTGG 10593545 Query 518633 TCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTT 518692 || || || || || || || || |||| || | || || || || | || || Sbjct 10593544 TCGTTGGCGATGATCTCGACCTTTCCATGCTGGAACACGCCCACGCACGAGTAGGTGGTG 10593485 Query 518693 CCTAAATCAATACCAATAGCA 518713 || ||||||||||||| |||| Sbjct 10593484 CCCAAATCAATACCAACAGCA 10593464 >seq5122 Length=22589142 Score = 86.0 bits (94), Expect = 5e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 518155 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 518214 |||||| | |||| || | ||||| || | ||| |||||||| || || ||||| | Sbjct 15701179 TTTGTCCTCTGTTTTGTCCATTCCATAGGCCAGAGCGGCAGCAGTGGGCTCGTTAATCAC 15701120 Query 518215 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 518274 | || ||||||||||| ||||| || |||||||| ||||| || | ||| || || Sbjct 15701119 GCGCAGTACATTAAGACCGGCAATCTGGCCAGCATCTTTGGTGGCCTGGCGTTGGGAGTC 15701060 Query 518275 GTTAAAATATGCAGGAACAGTAATAACGGC 518304 ||| ||||| || || || || | ||||| Sbjct 15701059 GTTGAAATAGGCGGGCACGGTGACCACGGC 15701030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780568130241544