Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5122 100 3e-16 >seq5122 Length=22589142 Score = 100 bits (110), Expect = 3e-16 Identities = 332/503 (66%), Gaps = 25/503 (5%) Strand=Plus/Minus Query 119215 CCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATAAAGTCAA 119274 ||||| |||| || || || || ||||| ||||| || ||||| | ||||| |||| | Sbjct 17925956 CCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGCGAGATCATCTCCATGAAGTTGA 17925897 Query 119275 AAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAG---ACGATCG 119330 | || || |||| ||| |||| | | |||||| || ||| ||| || Sbjct 17925896 AGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAACTC----CACAAGCAAACGGTCC 17925841 Query 119331 GAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTACACGGG 119390 | || |||| || || | ||||||| || ||||||| || || | |||| ||||| Sbjct 17925840 GCAACGAACTCTATGTACTGGGACATCAGGTCACAATTCATGCCGATTAAATTA-ACGGG 17925782 Query 119391 -AGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACG-ATGGAGTGAA 119448 || |||||| || ||| | || ||| ||| |||| || || ||| ||| | | Sbjct 17925781 CAGGGCATCGGTGAGGAACTCCTGCTCAATCGCCACCGCGTC----ACGGATGATCTCGA 17925726 Query 119449 TAGTTTCTGTCGA---TGGTTTGTTTCTCAAGA-GTTTAAACAACTCTACGGCAAATTCT 119504 | | | | ||| ||| | | | | | || | | |||| | |||||||| || Sbjct 17925725 T-GATGCGCTCGTGCTTGGGTCGCTGCACCAGGTGCTGGAACATCAGCACGGCAAAGTCG 17925667 Query 119505 TGATG-AAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAG 119563 || ||||||| | || |||||||| ||||| || |||| ||||||||||| || Sbjct 17925666 CAGTGCAAGCCCT-CGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGTCCAGGCATTAG 17925608 Query 119564 TCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCAC 119623 || | ||||| ||||| || |||| ||| || || ||||||||||||||||| Sbjct 17925607 ACCGCGCTTCTTAAGCCAGAAAATGGATGCAAAGCTGCCGCTGAAGAAGATGCCCTCCAC 17925548 Query 119624 ACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTT---GTCGAACCACTTGAG 119680 ||| || |||| | |||||| | ||| |||||| | || ||| || Sbjct 17925547 GGCGGCAAAGGCGATGATACGCTCCCCGAAATTGGCAGACTTGGAGGAGATCCAGGACAG 17925488 Query 119681 AGCCCAGTTGGCCTTACGCTCTA 119703 ||||||| ||||| |||| || Sbjct 17925487 GGCCCAGTCTGCCTTGCGCTTTA 17925465 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 167539 TCCTTGCCACCCATGAGGCGTGTACCAAATTGACCACATGGCTCGAGAAGATTGATGTTA 167598 || || || ||| | | ||| |||||||||||||| | |||||| || ||||||||||| Sbjct 4847008 TCTTTACCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTGATGTTG 4846949 Query 167599 TTCGACCCCGTATAATCGTTGGCCAACTTGACGATCGTT-TCAGCGAGGGAAACTTCGCC 167657 || | ||| | ||| | ||||| || ||||| || || || ||||| || || || Sbjct 4846948 TTGGCACCCACAAAATTCTGGGCCAGATTCACGATTGTCATCTGC-AGGGATACCTCTCC 4846890 Query 167658 GTGGTGGTAAGCACTCTTTTCAGCCACATATGCTGCCAACTGTGCAACCTTCATCTCA 167715 ||||||||| || | | || ||||| || | | | ||| || ||||||| |||| Sbjct 4846889 GTGGTGGTAGGCCGACATCTCTGCCACCGATCCGGATAGCTGGGCTACCTTCACCTCA 4846832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588938276087200