Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1295 145 2e-29 seq5123 140 7e-28 seq5124 134 3e-26 seq5121 125 2e-23 >seq1295 Length=1233 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| | ||||||||| || || || || || || | |||||| | ||||| || Sbjct 620 AACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAGTCAGAAAGAGTGCGTCCATCCTC 679 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || ||||| || || || || || ||||| ||||| || || |||||||| Sbjct 680 GAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTG 739 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || |||||||| |||||||| |||||||| ||||| | ||||| Sbjct 740 GATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCGAGGGTGATGGTCTT 799 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | |||||| Sbjct 800 GCCAGTCAGGGTCTTCACGAAGATTTGCAT 829 >seq5123 Length=25762168 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||| || || || |||||||||| || || | ||||| || Sbjct 6599214 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCATCCTC 6599273 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || ||||| || || || || || |||||||| || || || || ||||| Sbjct 6599274 GAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGGATTCCCTCCTTATCTTG 6599333 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || |||||||| |||||||| |||||||| ||||| | ||||| Sbjct 6599334 GATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCCAGGGTGATGGTCTT 6599393 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 6599394 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 6599423 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||| || || || || || || | |||||| | ||||| || Sbjct 6600582 AACCAAGTGAAGGGTCGACTCCTTCTGTATGTTATAGTCAGAAAGAGTGCGTCCATCCTC 6600641 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || ||||| || || || || || ||||| || || || || |||||||| Sbjct 6600642 GAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTG 6600701 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| || |||||||| |||||||| |||||||| ||||| | ||||| Sbjct 6600702 AATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCGAGGGTGATGGTCTT 6600761 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 6600762 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 6600791 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| | ||||||||| || || || || || || | |||||| | ||||| || Sbjct 6598758 AACCAAGTGCAAAGTGGACTCCTTCTGTATGTTATAGTCAGAAAGAGTGCGTCCATCCTC 6598817 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || ||||| || || || || || ||||| || || || || |||||||| Sbjct 6598818 GAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTG 6598877 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| || |||||||| |||||||| ||||| || | || | ||||| Sbjct 6598878 AATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACCTCCAAAGTGATGGTCTT 6598937 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | |||||| Sbjct 6598938 GCCAGTCAGGGTCTTCACGAAGATTTGCAT 6598967 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||| || || || |||||||||| || || | || ||||| Sbjct 6599898 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 6599957 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || || || || ||||||||||| || || || || || Sbjct 6599958 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCCTG 6600017 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| || ||||| ||||| ||||| ||||| || | || | ||||| Sbjct 6600018 AATCTTGGCCTTCACATTCTCGATGGTATCCGAGGGCTCCACCTCCAAAGTGATTGTCTT 6600077 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| ||||| || || ||||| | ||||| Sbjct 6600078 TCCAGTCAAGGTCTTCACGAAGATCTGCAT 6600107 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||| || || || |||||||||| || || | || ||||| Sbjct 6601038 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 6601097 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| || || || || ||||||||||| || || || || || Sbjct 6601098 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCCTG 6601157 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| || ||||| ||||| ||||| ||||| || | || | ||||| Sbjct 6601158 AATCTTGGCCTTCACATTCTCGATGGTATCCGAGGGCTCCACCTCCAAAGTGATTGTCTT 6601217 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| ||||| || || || || | ||||||| Sbjct 6601218 TCCAGTCAAGGTCTTCACAAAGATCTGCATTT 6601249 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | |||||| || ||||| || || || || || || | |||||| | ||||| || Sbjct 6599670 AACCAAGTGAAGGGTCGACTCCTTCTGTATGTTATAGTCAGAAAGAGTGCGTCCATCCTC 6599729 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||| || ||||| || || || || || ||||||||||| || || || || || Sbjct 6599730 GAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCCTG 6599789 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| || ||| ||||| |||||||| || ||| ||||| || | || | ||||| Sbjct 6599790 AATCTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCACCTCCAAAGTGATGGTCTT 6599849 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 6599850 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 6599879 >seq5124 Length=26641161 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| || ||||| || || || | || || | |||||||| ||||| Sbjct 11019389 GTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGACCATCTTCCAGCTG 11019330 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || || ||||||||||| ||||||||||| ||||| || Sbjct 11019329 CTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTT 11019270 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||| || || || || ||||| ||| || ||||| || | ||||| || || Sbjct 11019269 GGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCAAGAGTGATGGTCTTGCCCGT 11019210 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 11019209 GAGGGTCTTAACGAAGATCTGCAT 11019186 >seq5121 Length=18748788 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || ||||| |||| || || | || || || ||||| Sbjct 15143776 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTG 15143835 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || ||||| || || || || ||||| || || || Sbjct 15143836 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 15143895 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| ||||| || || || || || | ||| | ||||| || || Sbjct 15143896 GGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTGCCAGT 15143955 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||| |||||||| | |||||| Sbjct 15143956 CAGAGTCTTTACGAAAATTTGCAT 15143979 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || ||||| |||| || || | || || || ||||| Sbjct 15142636 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTG 15142695 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || |||||||| || || || ||||| || || || Sbjct 15142696 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTT 15142755 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| ||||| || || || || || | ||| | ||||| || || Sbjct 15142756 GGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTGCCAGT 15142815 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 15142816 AAGGGTCTTCACAAAGATCTGCAT 15142839 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || ||||| |||| || || | || || || ||||| Sbjct 15142864 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTG 15142923 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || |||||||| || || || ||||| || || || Sbjct 15142924 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGGATCTT 15142983 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| ||||| || || || || || | ||| | ||||| || || Sbjct 15142984 GGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTGCCAGT 15143043 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 15143044 GAGGGTCTTCACAAAGATCTGCAT 15143067 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| | |||||| |||||||| || || || ||||| |||| || || | || || Sbjct 15142399 CAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTC 15142458 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || |||||||| | || || || ||||| || || || || ||||| Sbjct 15142459 CTCTAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 15142518 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || |||||||||||| ||||| || || || || || | ||| | || Sbjct 15142519 CTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATAGT 15142578 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | || || || || | ||||| Sbjct 15142579 CTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15142611 Score = 105 bits (116), Expect = 1e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 || ||| | |||||| |||||||| || || || ||||| |||| || || | || || Sbjct 15143083 CAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTC 15143142 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || |||||||| | || || || ||||| || || || || ||||| Sbjct 15143143 CTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 15143202 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || |||||||||||| ||||| || || || || || | ||| | || Sbjct 15143203 CTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATAGT 15143262 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | || || || || | ||||| Sbjct 15143263 CTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15143295 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || ||||| |||| || || | || || || ||||| Sbjct 15143320 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTG 15143379 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || ||||| || || || || ||||| || || || Sbjct 15143380 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 15143439 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| ||||| || || || || || | ||| | ||||| || || Sbjct 15143440 GGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTGCCAGT 15143499 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 15143500 GAGGGTCTTCACAAAGATCTGCAT 15143523 Score = 102 bits (112), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| |||||||| || || || ||||| |||| || || | || || || ||||| Sbjct 15143548 GTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTG 15143607 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || || ||||| || || || || ||||| || || || Sbjct 15143608 CTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTT 15143667 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||||||||| ||||| || || || || || | ||| | ||||| || || Sbjct 15143668 GGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTGATGGTCTTGCCAGT 15143727 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 15143728 GAGGGTCTTCACAAAGATCTGCAT 15143751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109408761146108