Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5121 125 5e-24 seq5123 113 3e-20 seq5124 104 2e-17 seq1295 104 2e-17 >seq5121 Length=18748788 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 15142859 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 15142918 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 15142919 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 15142978 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| |||| ||||| | | |||||| || | ||| |||| Sbjct 15142979 ATCTTGGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAGGTGATGG 15143033 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||| |||||||||||||||||||| Sbjct 15143034 TCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15143067 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 15143315 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 15143374 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 15143375 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 15143434 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| |||| ||||| | | |||||| || | ||| |||| Sbjct 15143435 ATCTTGGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAGGTGATGG 15143489 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||| |||||||||||||||||||| Sbjct 15143490 TCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15143523 Score = 125 bits (138), Expect = 5e-24 Identities = 156/214 (73%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 15143543 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 15143602 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 15143603 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 15143662 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| |||| ||||| | | |||||| || | ||| |||| Sbjct 15143663 ATCTTGGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAGGTGATGG 15143717 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||| |||||||||||||||||||| Sbjct 15143718 TCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15143751 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||||||||| ||| || ||||| ||||| ||||| || ||| | ||| | || Sbjct 15143083 CAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTC 15143142 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 15143143 CTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 15143202 Query 34889 GCTAATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTT 34943 ||||| |||||| |||| ||||| | | |||||| || | ||| Sbjct 15143203 CTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAGGTG 15143257 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||| |||||||||||||||||||| Sbjct 15143258 ATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15143295 Score = 120 bits (132), Expect = 2e-22 Identities = 155/214 (72%), Gaps = 10/214 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 15142631 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 15142690 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 15142691 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGG 15142750 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| |||| ||||| | | |||||| || | ||| |||| Sbjct 15142751 ATCTTGGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAGGTGATGG 15142805 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || || |||||||||||||||||||| Sbjct 15142806 TCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 15142839 Score = 114 bits (126), Expect = 8e-21 Identities = 156/218 (72%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||||||||| ||| || ||||| ||||| ||||| || ||| | || | || Sbjct 15142399 CAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTC 15142458 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 15142459 CTCTAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTC 15142518 Query 34889 GCTAATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTT 34943 ||||| |||||| |||| ||||| | | |||||| || | ||| Sbjct 15142519 CTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAGGTG 15142573 Query 34944 ATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || || ||||| |||||||||||||||||||| Sbjct 15142574 ATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15142611 Score = 113 bits (124), Expect = 3e-20 Identities = 155/217 (71%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| ||| || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 15143771 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 15143830 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | || ||||| ||| | || | ||||||||||| Sbjct 15143831 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 15143890 Query 34893 ATCTTCTGTTTGACG-----GATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| |||||| |||| ||||| | | |||||| || | ||| |||| Sbjct 15143891 ATCTTGGCCTTGACGTTCTCGATGGTATCGGAT-----GGCTCAACCTCCAAGGTGATGG 15143945 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || || |||||||| || || || |||||||| Sbjct 15143946 TCTTGCCAGTCAGAGTCTTTACGAAAATTTGCATATT 15143982 >seq5123 Length=25762168 Score = 113 bits (124), Expect = 3e-20 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||||||||| ||||| | ||| |||| || Sbjct 6600582 AACCAAGTGAAGGGTCGACTCCTTCTGTATGTTATAGTCAGAAAGAGTGCGTCCATCCTC 6600641 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || ||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 6600642 GAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTG 6600701 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| || || || || || | || | ||| || |||| ||| ||||| Sbjct 6600702 AATCTTAGCCTTCAC--ATTCTCAATAGTGTCCGATGGCTCCACTTCGAGGGTGATGGTC 6600759 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || |||||||| |||||||||||| Sbjct 6600760 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 6600792 Score = 105 bits (116), Expect = 4e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||||||||| ||||| | ||| |||| || Sbjct 6599670 AACCAAGTGAAGGGTCGACTCCTTCTGTATGTTATAGTCAGAAAGAGTGCGTCCATCCTC 6599729 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || ||||| || || || || ||||| ||| | || | |||||||| || Sbjct 6599730 GAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCCTG 6599789 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| || ||| | | || | || | ||| || || | || ||||| || Sbjct 6599790 AATCTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCACCTCCAAAGTGATGGTCTT 6599849 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || |||||||| |||||||||||| Sbjct 6599850 GCCAGTCAGGGTCTTCACGAAGATCTGCATA 6599880 Score = 100 bits (110), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| || ||||| ||||||||||| ||||| | ||| |||| || Sbjct 6598758 AACCAAGTGCAAAGTGGACTCCTTCTGTATGTTATAGTCAGAAAGAGTGCGTCCATCCTC 6598817 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || ||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 6598818 GAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTG 6598877 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| || || || || || | || | ||| || || | || ||||| Sbjct 6598878 AATCTTAGCCTTCAC--ATTCTCAATAGTGTCCGATGGCTCCACCTCCAAAGTGATGGTC 6598935 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || |||||||| ||||| |||||| Sbjct 6598936 TTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 6598968 Score = 98.7 bits (108), Expect = 6e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||| || || || ||| | ||| | || || Sbjct 6601038 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 6601097 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || |||||||| || || || ||||| ||| | || | |||||||| || Sbjct 6601098 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCCTG 6601157 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| || || || || || | || || ||| || || | || || || Sbjct 6601158 AATCTTGGCCTTCAC--ATTCTCGATGGTATCCGAGGGCTCCACCTCCAAAGTGATTGTC 6601215 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || | |||||||||||||||||||| || Sbjct 6601216 TTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 6601250 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||| || || || ||| | ||| | || || Sbjct 6599898 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 6599957 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || |||||||| || || || ||||| ||| | || | |||||||| || Sbjct 6599958 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCCTG 6600017 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 |||||| || || || || || | || || ||| || || | || || || Sbjct 6600018 AATCTTGGCCTTCAC--ATTCTCGATGGTATCCGAGGGCTCCACCTCCAAAGTGATTGTC 6600075 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || | |||||||| |||||||||||| Sbjct 6600076 TTTCCAGTCAAGGTCTTCACGAAGATCTGCATA 6600108 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||||| || || ||||| ||||| || || || ||| | ||| | || || Sbjct 6600810 AACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 6600869 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || |||||||| || || || ||||| ||| | || | |||||||| || Sbjct 6600870 CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCTTG 6600929 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 || || || ||| | | || | || | ||| || || | || ||||| || Sbjct 6600930 GATTTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCACCTCCAAAGTGATGGTCTT 6600989 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || |||||||| ||||| |||||| Sbjct 6600990 GCCAGTCAGGGTCTTCACGAAGATTTGCATA 6601020 >seq5124 Length=26641161 Score = 104 bits (114), Expect = 2e-17 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||||||||| || ||| | || |||| ||| Sbjct 11019394 ACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGACCATCTTCC 11019335 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||| ||| | || | || || ||||| | Sbjct 11019334 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGA 11019275 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| || | ||||| | ||| | || || || | || ||||| Sbjct 11019274 ATCTTGGCTTTGAC--AT--TTTCGATAGTATCCGATGGTTCGACCTCAAGAGTGATGGT 11019219 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || |||||||| ||||| || ||||||||||| || Sbjct 11019218 CTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 11019183 >seq1295 Length=1233 Score = 104 bits (114), Expect = 2e-17 Identities = 152/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | ||| || ||||| ||||||||||| ||||| | ||| |||| || Sbjct 620 AACCAAGTGCAAAGTGGACTCCTTCTGGATGTTATAGTCAGAAAGAGTGCGTCCATCCTC 679 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || ||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 680 GAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTG 739 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| || || || || || | || | ||| || |||| ||| ||||| Sbjct 740 GATCTTAGCCTTCAC--ATTCTCAATAGTGTCCGATGGCTCCACTTCGAGGGTGATGGTC 797 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || |||||||| ||||| |||||| Sbjct 798 TTGCCAGTCAGGGTCTTCACGAAGATTTGCATA 830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324613327037472