Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_018274.1 Length=36847 Score E Sequences producing significant alignments: (Bits) Value seq3473 2194 0.0 seq301 807 0.0 >seq3473 Length=3319 Score = 2194 bits (2432), Expect = 0.0 Identities = 1351/1441 (94%), Gaps = 0/1441 (0%) Strand=Plus/Plus Query 30288 CCGGCCAGGCGTCGCCGCCGCTGGGTTTTGCCGCCCTGGAAGAACGCACTTGGACGGTCA 30347 |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| Sbjct 1 CCGGCCAGGCGTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACTTGGACCGTCA 60 Query 30348 GCATTGGCACGGACGGCCCGCCCGTCGTCAATGCGAGGATCGTTTGGAGGCTCCAGGGCG 30407 ||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||| Sbjct 61 GCATTGGCACGGACGGCCCGCCCGTCGTCAATGCGCGGATCGTCTGGACGCTCCAGGGCG 120 Query 30408 AGCCGGACCTGGTCCTGGTCATCACCGGCAATCGCATCATCGCTTGGACGTTCGCGCCGG 30467 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 121 AGCCGGACCTGGTCCTGGTCATCACCGGCAATCGCATCATCGCCTGGACCTTCGCGCCGG 180 Query 30468 ACTGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAAT 30527 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 ACTGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAAT 240 Query 30528 CAGCCGTGACCCAGCGCCGAGCCATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACA 30587 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 241 CAGCCGTGACCCAGCGCCGGGCTATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACA 300 Query 30588 TGTACGCGGTGGACCGCGAGCGGCAGCTGCTGGACATGACGCTGTTCGGCTGGGGCGCGC 30647 |||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 301 TGTACGCGGTAGACCGCGAGCGGCAGCTCCTGGACATGACGCTGTTTGGCTGGGGCGCGC 360 Query 30648 GCATTTGGGCGCTGCCTATCTGGCCTGATATCCAGCTGCTCCAGGAACCGCTGGCGGCCG 30707 | |||||||||||||| || |||||||||||||| |||||||| |||||||||||||||| Sbjct 361 GAATTTGGGCGCTGCCGATTTGGCCTGATATCCAACTGCTCCAAGAACCGCTGGCGGCCG 420 Query 30708 GCTCGCTGAGCATTCCGTGCGGCACGGCCGGCCTCGACTTCCGCGACGGCGGCCTGGCGA 30767 ||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||| Sbjct 421 GCTCGCTGAACATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTGGCGA 480 Query 30768 TGCTGCGCGGCGAGGACGCTTTTGCTTATGAGGTCGTCGAGGTCAAGACGGTGACCGCCA 30827 ||||||||||||||||||| || | ||||| ||||||||||||||| | ||||||||| Sbjct 481 TGCTGCGCGGCGAGGACGCCTTCACCTATGAAGTCGTCGAGGTCAAGGCAGTGACCGCCG 540 Query 30828 GCGGCCTGGACCTGGTTCGGCCCGTCCAGGCCGCCTGGGGAACTGGCTCGCGACTGTACC 30887 ||||||||||||||| || |||||||||||| |||||| |||||||||||||||||||| Sbjct 541 CCGGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGGTAACTGGCTCGCGACTGTACC 600 Query 30888 CGGTGCGCACCGCGCAGCTGACCGAGCAGCCCACGCTGACCCGGCTGACCGATACCGCGC 30947 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 601 CGGTGCGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGC 660 Query 30948 AGTCTGCGCGGGTGTCGTTCCTTGTGATGGAACCCAGCAGTTGGCCCGAGGTGATGCCGG 31007 |||||||||||||||||||||| | ||||| |||||| ||||||||||| ||||||| Sbjct 661 AGTCTGCGCGGGTGTCGTTCCTGATAATGGAGCCCAGCGCCTGGCCCGAGGTAATGCCGG 720 Query 31008 CGACGATGTACCGGGGGCGTCCTGTCCTGGAACAGCGCCCGGACGAAAGCGAAGACCTGA 31067 |||||| ||| ||||||| || || ||||| |||||||||||||||||||||||||| | Sbjct 721 CGACGACCTACAGGGGGCGGCCAGTGCTGGAGCAGCGCCCGGACGAAAGCGAAGACCTCA 780 Query 31068 CGTCGAGCTATCAGCGCCTGCTGTCCACCCTGGATAACGGCAGCGCCATTCCCCGCGTGA 31127 | || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 781 CCTCCAGCTATCAGCGCCTGCTGTCCACCCTGGACAACGGCAGCGCGATTCCCCGCGTGA 840 Query 31128 CCGACGTCGCCGGCATGGCGCTGCCCGTCATCGGCCATCGGTGGATCGGCATGGGCCGAG 31187 ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct 841 CCGACGTCGCCGGGATGGCGCTGCCCGTCATCGGTCATCGCTGGATCGGCATGGGCCGAG 900 Query 31188 CCGAACGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTACGCGGCCAGCAGAAGCCGCTGT 31247 |||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 901 CCGAGCGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTGCGAGGCCAGCAGAAGCCGCTAT 960 Query 31248 GGGTGCCGACCCACGCCGACGACCTGACCCTGGTCGCCACCGTCTCGCAGCTGTCCACCG 31307 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 961 GGGTGCCGACCCACGCCGACGACCTGACCCTAGTCGCCACCGTCTCGCAGCTGTCCACTG 1020 Query 31308 CGCTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAACGGCCGGCCGGGCCGTCGCG 31367 |||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||| Sbjct 1021 CGCTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAATGGGCGACCGGGTCGTCGCG 1080 Query 31368 ATATCCGCATCGAGCTATACGACGGCACGGTCTATCACCGCCGCATCCTCACCAGCACAG 31427 |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 1081 ATATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGCCGCATTCTCACCAGCACCG 1140 Query 31428 AGCTGGACGCCGACACCGAGCGCTTGGCCATCGATGCCGCCCTGGGCCGGCTGGTCGAGC 31487 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1141 AGCTGGACGCCGACACCGAGCGCTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGC 1200 Query 31488 CTGGTGACGTGGCGCGCATTTGTTTCATGGCGCTCTGTAGCGCCGCCACCGACGTGGTCG 31547 | || || |||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 1201 CGACCGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCAGCGACGTGGTCG 1260 Query 31548 AGATCGAGCACGTCACTGATAGCGAGGGCGTAGCAACTGCCGCCCTGACGTTCAAAGGGG 31607 |||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||||| Sbjct 1261 AGATTGAGCACGTCACCGATAGCGAGGGCGTCGCAACCGCCGCGCTGACATTCAAAGGGG 1320 Query 31608 TTCGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGG 31667 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 TTCGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGG 1380 Query 31668 CTGTACCAGTTCAGCCGTGGAGCCATCCGCTGGAGCTACAACAGCAGCGACCGGGACATC 31727 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1381 CTGTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATC 1440 Query 31728 A 31728 | Sbjct 1441 A 1441 Score = 1130 bits (1252), Expect = 0.0 Identities = 725/785 (92%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 34106 GACCGGACGCCTCGGGCGATCACTGTGCGCCGCCTGATCGAGGCGCCATATCGTGAGCTG 34165 |||||||||||||||||||||||||||||||||||||||||||| || ||||| || | Sbjct 2536 GACCGGACGCCTCGGGCGATCACTGTGCGCCGCCTGATCGAGGCACCCTATCGCGAACCT 2595 Query 34166 GCC---GGCGTGATTGATCCTG-CGAATCTCCAGCTCCTGGACGTGTCCGCATCGT-ACC 34220 ||| |||||||| ||||| | | ||||||||||||||||||||| ||| || | || Sbjct 2596 GCCCCGGGCGTGATCGATCCCGGCAAATCTCCAGCTCCTGGACGTGAGCGCGTCCTTACT 2655 Query 34221 TGGCTGCGCTGGCC-GAGGCACCGACCAGCCTGTCGCAGAGCTACACCCTGACCGACCGC 34279 |||| ||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 2656 TGGCCGCGCTGGCCCGAGGCGCCGACCAGCCTGTCGCAGAGCTACACACTGACCGACCGC 2715 Query 34280 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGGGATTGGTGCCCGACCGGCCTG 34339 |||||||||||||||||||||||||||||||||||||| || |||||||||||||| || Sbjct 2716 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGACTA 2775 Query 34340 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGACCGAACGTCGTCACGCTGACGAACGCTAGC 34399 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| Sbjct 2776 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGTCCGAACGTCGTCACGTTGACGAACGCCAGC 2835 Query 34400 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCTGTGGTGGACGACGAGATAGTCCGGGTG 34459 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 2836 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCAGTCGTGGACGACGAGATAGTCCGGGTC 2895 Query 34460 GATGCGGTCAACTACGCCAGCGGTACTGTCACCCTGGCACGCGGCTGCGCCGATACCGTA 34519 ||||||||||||||||||||||| || |||||||| || ||||||||||||||||||||| Sbjct 2896 GATGCGGTCAACTACGCCAGCGGCACGGTCACCCTCGCGCGCGGCTGCGCCGATACCGTA 2955 Query 34520 CCAGCCAAGCACCTGGCCGGGGCTCGGGTCTGGTTCTATGACACGTTCGAAGCGGTGGAC 34579 || |||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 2956 CCGGCCAAGCATCTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCTGTGGAC 3015 Query 34580 GAGACGGTCTACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACCAACACCAGCGAG 34639 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3016 GAAACGGTCTACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACGAACACCAGCGAG 3075 Query 34640 GGCCAGCTCGCCCCGGCGCTGGCCGCCACCGACAGCCTGACGCTGACCGGGCGCCAAGGT 34699 ||||| || ||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 3076 GGCCAACTGGCCCCGGCGCTGGCCGCCACCGACAGCCTCACCCTGACCGGGCGCCAAGGT 3135 Query 34700 AAGCCGTACCCGCCCGGCCAGTTTCGCATCAACGGCAGCGCGTACCCGGCCAAGGTCTAC 34759 |||||||| |||||||||||||| ||||||||||||||||||||||| | || |||||| Sbjct 3136 AAGCCGTATCCGCCCGGCCAGTTCCGCATCAACGGCAGCGCGTACCCAACGAAAGTCTAC 3195 Query 34760 GGGGCGTTGTCTGTGAGCTGGGCGATGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 34819 |||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3196 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 3255 Query 34820 GATACCACGGTCGGCAACATCGGGCCCGAAGATGGGGCGACGGTGACGCTCCAGGTCTAC 34879 ||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||| Sbjct 3256 GATACCACGGTCGGCAACATCGGACCCGAAGATGGGGCGACGGTTACGCTCCTGGT-TAC 3314 Query 34880 AGCGG 34884 ||||| Sbjct 3315 AGCGG 3319 >seq301 Length=948 Score = 807 bits (894), Expect = 0.0 Identities = 462/472 (98%), Gaps = 0/472 (0%) Strand=Plus/Plus Query 7607 CCGCAGACCCGCGAACAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 7666 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 CCGCAGACCCGCGAACAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 62 Query 7667 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 7726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 122 Query 7727 GAGCCGGCCGAAGACTTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 7786 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 182 Query 7787 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACC 7846 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACA 242 Query 7847 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 7906 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 302 Query 7907 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGTTTCATCCGCGTCAAGGAAGAGGTG 7966 ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 303 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGCACCAAGGAAGAGGTG 362 Query 7967 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTTCCGGGGCTGACCGTG 8026 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 363 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTGCCGGGGCTGACCCTG 422 Query 8027 AACTCCGGCATCGAAGACTTCGCAATCGTGCCTTTCGAAGCGGAGGTGCAGT 8078 ||| |||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 423 AACACCGGCATCGAGGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGT 474 Score = 345 bits (382), Expect = 1e-90 Identities = 198/201 (99%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 8273 AGGACGTGTGACATGGCCCGCAACCGCGCGCAACAGCTGTGCATCGTCACCTTGGACTAT 8332 ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 749 AGGACGTGTGACATGGCACGCAACCGCGCGCAACAGCTGTGCATCG-CACCTTGGACTAT 807 Query 8333 CAGCGCTTCCTGTTACCCCAGGCTGATGCACTCAAGCTGATAGACATCATGAGTCGAGCC 8392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 808 CAGCGCTTCCTGTTACCCCAGGCTGATGCACTCAAGCTGATAGACATCATGAGTCGAGCC 867 Query 8393 GCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTGGGTTCAAGTACACCGTCGGCGAAGTG 8452 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 868 GCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTGGATTCAAGTACACCGTCGGCGAAGTG 927 Query 8453 CCGGAAGTCGAGTTGACGATA 8473 ||||||||||||||||||||| Sbjct 928 CCGGAAGTCGAGTTGACGATA 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117781632845992