Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq5122 131 2e-25 >seq5122 Length=22589142 Score = 131 bits (144), Expect = 2e-25 Identities = 189/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 197022 CAGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGTTGTC 197081 ||||||||||||| | ||||| || || || || || ||| | ||| | ||| || Sbjct 21160687 CAGATCCTCGTCGGTGAAGCCTGTTCCAATTTTGCATATGCTCTGATACTCTTCGTTCTC 21160628 Query 197082 GGGATTGTAACAGGCGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTT 197141 || || || ||||| |||| || | || |||||||| |||| | ||| || || Sbjct 21160627 GGTATCATAGCAGGCAAGTAGAAATCCTCCATAGGTTCCAGTTCGCCGGCCCTTGCCTTT 21160568 Query 197142 GAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCAT--GTAATCTTTC 197199 | |||| || |||||||| || || || | ||||| ||| || || ||| || ||| Sbjct 21160567 GTAGCCGCCAATAACCACTAGGTCAAGTGAGTCGCCCACA--TTGGATAGGTAGTCCTTC 21160510 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGG 197259 |||| ||| ||||| ||| ||||| |||||||||||| ||||| || | | |||| Sbjct 21160509 TTCAATTTTAGCCAATTTCGAGATCGCTTGGCAATCTCATAGGTGGCCTCCTCATCCAAC 21160450 Query 197260 GTCTTGATCATCAATCCCTCGCAAT 197284 || |||| ||| | |||||||||| Sbjct 21160449 GTTTTGACCATGAGGCCCTCGCAAT 21160425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676686255469120