Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5124 138 9e-28 seq5123 111 1e-19 seq5121 91.5 1e-13 >seq5124 Length=26641161 Score = 138 bits (152), Expect = 9e-28 Identities = 268/393 (68%), Gaps = 2/393 (1%) Strand=Plus/Plus Query 9001 CCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGTA-ACCTCTAC 9059 ||||| || || || || |||| ||||| | |||||| || | || ||| || Sbjct 14434237 CCGGTGGAACCGAATCCCGCCTCGCCGCGCTCGGTGTCC-TCCAGCTTGTCCACCATCAC 14434295 Query 9060 CAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCAC 9119 |||| ||||| ||||| | || ||||| || || || || | ||| || | ||||| Sbjct 14434296 CAGTTGCGGATAGAAGATGCGCTCGCAAATGAACTGGGCGATGCGGTCGCCGTGCTTCAC 14434355 Query 9120 GACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTC 9179 | || ||| | || ||||||||||| || || || | || || | |||||||| Sbjct 14434356 CTCGAAATCTACATTAGAGTGATTGAACAGGACGACGCCGAGATTGCCGCGATAATCCTC 14434415 Query 9180 ATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 || | |||||| || ||||| |||||||||| ||| || || || || || || || || Sbjct 14434416 GTCCACCACACCGGCGCCCACATCGATGAAGTTCTTCACGGCCAGCCCGGACCGAGGGGC 14434475 Query 9240 GATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTT 9299 | || |||||| | ||| |||| | ||||| ||| ||||||| |||| | |||| Sbjct 14434476 CACCCGTCCGTAGGAGCCCTCCGGAAGCTGCACTTGCAGGTCGGTCTTGACGACGGCCTT 14434535 Query 9300 GCCGTGTTTTGGAATCACGGTGTCGTAGCCGCTCTTGAGATCAAACCCAGCTGCCCTGTC 9359 ||| || || | ||| ||||||| |||| | |||| || || || || | Sbjct 14434536 GCCTCGTGCCGGCACCACCAGGTCGTAGGCGCTTCGCAAGTCAACGCCCGCCGCTTTGGC 14434595 Query 9360 CGATCCCTTCGTGGGCGCAAAAGCGTTTTCGGT 9392 |||||| | ||| | ||||| |||||||| Sbjct 14434596 GGATCCCCTTACCGGCTCCAAAGCATTTTCGGT 14434628 Score = 104 bits (114), Expect = 2e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| || || ||| | ||| Sbjct 4301709 AGGCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGA 4301650 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||||||| Sbjct 4301649 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCC 4301590 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||||| || ||| | | | || || | ||||||||||| || Sbjct 4301589 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTG 4301530 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || || || | ||||| || || || ||||| ||| Sbjct 4301529 ATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATGGTG 4301488 >seq5123 Length=25762168 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || |||||||| || || | || |||| ||| Sbjct 6601039 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 6601098 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| ||||| ||||| ||||| | |||| |||||||| || | Sbjct 6601099 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCCTGA 6601158 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||||||||||| || || || ||| Sbjct 6601159 ATCTTGGCCTTCACATTCTCGATGGTATCCGAGGGCTCCACCTCCAAAGTGATTGTCTTT 6601218 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| |||||||| Sbjct 6601219 CCAGTCAAGGTCTTCACAAAGATCTGCAT 6601247 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || |||||||| || || | || |||| ||| Sbjct 6599899 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 6599958 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| ||||| ||||| ||||| | |||| |||||||| || | Sbjct 6599959 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCCTGA 6600018 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||||||||||| || || || ||| Sbjct 6600019 ATCTTGGCCTTCACATTCTCGATGGTATCCGAGGGCTCCACCTCCAAAGTGATTGTCTTT 6600078 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || || || |||||||| Sbjct 6600079 CCAGTCAAGGTCTTCACGAAGATCTGCAT 6600107 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || | ||| ||| || || || || || ||||| ||| | || | || || Sbjct 6598759 ACCAAGTGCAAAGTGGACTCCTTCTGTATGTTATAGTCAGAAAGAGTGCGTCCATCCTCG 6598818 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | ||| | ||||||||||| | Sbjct 6598819 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGA 6598878 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | || || || | ||||||||||| || || || || Sbjct 6598879 ATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACCTCCAAAGTGATGGTCTTG 6598938 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || || || || ||||| Sbjct 6598939 CCAGTCAGGGTCTTCACGAAGATTTGCAT 6598967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || || || ||||| ||| | || | || || Sbjct 6600583 ACCAAGTGAAGGGTCGACTCCTTCTGTATGTTATAGTCAGAAAGAGTGCGTCCATCCTCG 6600642 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| ||||| || ||||| ||||| ||||| | ||| | ||||||||||| | Sbjct 6600643 AGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGA 6600702 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | || || || | |||||| || | || || || || Sbjct 6600703 ATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACTTCGAGGGTGATGGTCTTG 6600762 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || || || |||||||| Sbjct 6600763 CCAGTCAGGGTCTTCACGAAGATCTGCAT 6600791 >seq5121 Length=18748788 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || ||| ||| || || || ||||| || || || | || Sbjct 15143762 AGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 15143821 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||| | |||||| Sbjct 15143822 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 15143881 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 15143882 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTG 15143941 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||| ||||| ||||| ||||| Sbjct 15143942 ATGGTCTTGCCAGTCAGAGTCTTTACGAAAATTTGCAT 15143979 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || ||| ||| || || || ||||| || || || | ||| Sbjct 15142394 AGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGA 15142453 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || |||| ||||| ||||| | ||| | |||||| Sbjct 15142454 CCGTCCTCTAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 15142513 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 15142514 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTG 15142573 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| |||||||| Sbjct 15142574 ATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15142611 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || ||| ||| || || || ||||| || || || | || Sbjct 15143078 AGACGCAGAACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 15143137 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||| | |||||| Sbjct 15143138 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 15143197 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 15143198 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTG 15143257 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| |||||||| Sbjct 15143258 ATAGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15143295 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || ||| ||| || || || ||||| || || || | || Sbjct 15143306 AGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 15143365 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||| | |||||| Sbjct 15143366 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 15143425 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 15143426 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTG 15143485 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| |||||||| Sbjct 15143486 ATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15143523 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || ||| ||| || || || ||||| || || || | || Sbjct 15143534 AGACGCAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 15143593 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| ||||| || |||| ||||| ||||| | ||| | |||||| Sbjct 15143594 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCC 15143653 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||| ||||||| || Sbjct 15143654 TTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAGGTG 15143713 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || ||||| |||||||| Sbjct 15143714 ATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 15143751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380913810923052