Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5122 282 8e-71 seq5124 235 1e-56 >seq5122 Length=22589142 Score = 282 bits (312), Expect = 8e-71 Identities = 561/823 (68%), Gaps = 11/823 (1%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || |||| | |||||||| ||||| ||||| || |||| |||||| |||| Sbjct 17925967 CTGGTACTCTGCCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGCGAGATCATCTC 17925908 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||||||||| ||||| || | | | ||||| || | |||| Sbjct 17925907 CATGAAGTTGAAGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAACTCCACAAGCAA 17925848 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||| ||| |||| ||||| | ||||| ||| |||||||| || | Sbjct 17925847 ACGGTCCGCAACGAACTCTATGTACTGGGACATCAGGTCACAATTCATGCCGATTAAATT 17925788 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||||||| || | ||||| ||||||| ||| ||| ||| || || | | |||| Sbjct 17925787 AACGGGCAGGGCATCGGTGAGGAACTCCTGCTCAATCGCCACCGCGTCACGGATGATCTC 17925728 Query 48079 CTTAACGCGGGACTC-TGAG-GGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCA-GG 48134 | | ||| ||| || || | | ||| | ||||||| | | | || ||| || Sbjct 17925727 GATGATGCG---CTCGTGCTTGGGTCGCTGCACCAGGTGCTGGA---ACATCA-GCACGG 17925675 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| | ||||||||| ||||| || ||| ||| ||||||||||| || |||| Sbjct 17925674 CAAAGTCGCAGTGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGTCCAG 17925615 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | || || ||||||||||| | || || ||| ||||||||||| Sbjct 17925614 GCATTAGACCGCGCTTCTTAAGCCAGAAAATGGATGCAAAGCTGCCGCTGAAGAAGATGC 17925555 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 ||||||| || || || ||| ||| | ||| |||||| || |||| ||||||| Sbjct 17925554 CCTCCACGGCGGCAAAGGCGATGATACGCTCCCCGAAATTGGCAGACTTGGAGGAGATCC 17925495 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 |||| || |||||||||||||| ||| | |||||||| || || || ||| | Sbjct 17925494 AGGACAGGGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATCGTTTCGATAGCGTTGAACA 17925435 Query 48375 GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAG 48434 | | || || || | ||| | || || || |||| ||||||||| | Sbjct 17925434 GGTACTCGCGCTGGTTCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCG 17925375 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 ||||||| ||||| || ||||||||||| ||||||||| | ||||| ||||||| Sbjct 17925374 AGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGTGCCTCCGTGACCTGCA 17925315 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 | || ||| | ||||| ||||||||| || || || ||||| || || || |||| Sbjct 17925314 CCTCCTGACTGAAGCGCTCCACCAGATTCTCGTTTACGATGCCATCGGAGGCGGCGAAGA 17925255 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614 | || || || || | |||||||||||||| || | || | |||| | | Sbjct 17925254 AAGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGTCGGTGCCAGTCAGTAA 17925195 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 ||| ||| || ||||| || || || |||||||| || || Sbjct 17925194 GGTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAGGC 17925152 >seq5124 Length=26641161 Score = 235 bits (260), Expect = 1e-56 Identities = 1199/1880 (64%), Gaps = 81/1880 (4%) Strand=Plus/Plus Query 212551 TCACCGTAAACTGTACTGGATCAGCAGCAGCCTTGGTGCGTAGATAGTACATGCCGGTCT 212610 |||| || ||||| | | || ||||| | ||| ||||| ||||||||||| ||||| | Sbjct 10932367 TCACGGTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCCGGTTT 10932426 Query 212611 TTAGGCC--CTTGCCCCAGCCGTGCATGTGCATTGCTGTGAGTTTCTTCAGCTTAATATT 212668 | || || ||| || || || | ||| || | || ||||| | ||| | Sbjct 10932427 TAAGACCAGCTTTCC--AGGAGTAAAAGTGTATGGAGGTCAGTTT-------TCCATAGT 10932477 Query 212669 CTGGTCATCCTCGTGGCCCAGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGC 212728 || ||| || ||| ||| | ||| | ||||||||||| |||||||| | | Sbjct 10932478 TGGG-----CTC-TG--CCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCACC 10932529 Query 212729 CCTGTCAGCGGCCATGTCTATGAT--ATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAG 212786 | ||| |||||||| | || | | | ||| ||| |||||||| |||||| | Sbjct 10932530 ACGGTCGGCGGCCATTTTAATCGTGGACTTAACTG--AGATTTCCCACACCGTCTTGTAC 10932587 Query 212787 ATTTCTTTGAGGTCCTCTGGG--AAGCCGGGGATGTTCTGCACAGACCCCCTG-TG--TA 212841 | || | |||||||| | | | ||||| || | || |||||| || || Sbjct 10932588 AGATCGCGAAC--CCTCTGGGGGATGGCCTCAATGTTTTGGATTGAGCCCCTGCTGGATA 10932645 Query 212842 TGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTG-ACC 212900 || || | | | |||||| |||| ||| | | || | ||| | | | | | Sbjct 10932646 TGATCTGGTTCTT---CATGTCGTCGTCCCACAAGTCCA-GCTCTGTTAGGTCGCGCAAC 10932701 Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 | ||| ||||||| | ||| || || || || || || | ||| ||| | ||| | Sbjct 10932702 AAATGATGGTTGACCACCTGAAACTCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTG 10932761 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 || |||||||||| | || ||||| |||| || || || || || |||||||| Sbjct 10932762 GTATAGGGCTCGAAGGATTCATTGTTGCCCATTATTTGAGCTGTAGATGCAGTGGGCATT 10932821 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGA-AGCT-CTG 213078 ||||| ||||| || ||| | || ||||||| |||| | | || || | ||| Sbjct 10932822 GGAGCAACCAGCAGGGAGTTGCGGACACCGTGCTTCTTGATG-GACTCCTTCAGTTTCTG 10932880 Query 213079 CCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGA 213138 || ||||||| | | || ||| |||| |||||||| ||||||| | Sbjct 10932881 CC-AGTCCCAAAGGTTCGTTGGGACCTTGTCC---------CACATGTCGTACTGCAAAA 10932930 Query 213139 TGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCT 213198 | || |||||||| |||||||||| || | ||| ||||| | || |||||| | Sbjct 10932931 TTCCCTTGCTCACCGGGCTGCCCTCATAGGTTTCGTAAGGGCCTTCGGTCTGGGCCAGTT 10932990 Query 213199 CGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCT 213258 | ||| || | || ||| | ||||| |||||||| ||||||| | || | | Sbjct 10932991 CACAGCTGGCTTCCAAGGCTCCATAGTAAATGGTTTCGAATATCTGCTGATTCAACAGAC 10933050 Query 213259 TGGCCTCTGGGGACGTGAA---GGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCT 213315 ||| ||| || | | ||| ||| |||| | || | ||||| | |||| Sbjct 10933051 CGGCTTCTTC--ACTTTCATACGGGAATCG-CATGAGAATCAAGGCGTCAGCGAATCCCT 10933107 Query 213316 GGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGT 213375 | | || ||||| | ||| | ||| |||| || ||||| ||| |||||| | Sbjct 10933108 GAATACCTATGCCCACGGGACGGTGCCTCAAATTTGACTTCCTTGCCTCTGGCAAGGGAT 10933167 Query 213376 AAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCA 213435 || ||||| || || |||||||| || || | ||| | | |||||||| | | Sbjct 10933168 AATAGTTGATATCAATTATCTTGTTTAGATTTCTGGTAACTATCTTGGTGACTTCCTTGA 10933227 Query 213436 GGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGG 213495 | | || | || | |||| | ||| || |||||| ||||| ||| | Sbjct 10933228 GCTTCTTGAAATC--ATACGTCTTCTCCGGTGTG-ACAAACATGTTGAGGGCAATGGATG 10933284 Query 213496 CCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGT 213555 ||| |||||| || || | ||| | | | | ||| || | ||| || ||||||| || Sbjct 10933285 CCAAGTTGCAGACAGCTATCTCATCCGGCGCGGAGTATTCAACGATTTCCGTGCACAAGT 10933344 Query 213556 TGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGT 213615 ||||||| ||||||||| | ||||| ||||| ||| |||| || |||||| Sbjct 10933345 TGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGA 10933404 Query 213616 AGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT--CCAGAGGTA 213673 |||||||||| || || || || | || | | | | || ||| ||| ||| | Sbjct 10933405 AGAGCATGTACGGATTTCCAGTTTCCACTTGCGCCTCAATGAT--GGCATACCACAGGGA 10933462 Query 213674 CCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTC 213733 ||||| ||| || || |||| | |||||| | || || |||| Sbjct 10933463 TTGAGCCTTAACCGTTCGGTTG---GCTCGACCCTCTTGCTCGTATTTCTCATACAGCTT 10933519 Query 213734 GTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCT 213793 | |||||| | |||||| || | || || || || ||| |||||||| Sbjct 10933520 TTCGAATTCATCGCCCCACACATCTTGGAGGCCAGGGCATTTGTGGGGGCACATGAGCGA 10933579 Query 213794 CCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAA 213853 ||| || |||| | || | || |||||| || || || | |||||| ||| || Sbjct 10933580 CCAATCACCGTTGGCCTCCACGCGCTTCATGAAGAGATCGGGTATCCACAGAGCGTAAAA 10933639 Query 213854 CAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAA 213913 ||| || | || | |||| ||| || | |||||| || || || || ||||| Sbjct 10933640 CAGATCGCGGGCGCGATTCTCTTCCTTGCCCGTGTTTTTCTTTAGTTCGAGGAACTCAAA 10933699 Query 213914 GATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGCCG---CC 213970 || |||| |||||| ||||||| ||| ||||||||||| || || | ||||||| || Sbjct 10933700 GACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCTCC 10933759 Query 213971 CTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGA 214030 ||||||||| | ||||| ||||||||| | || | ||| |||| ||| ||||| Sbjct 10933760 CTGGTCCACATAACGCGCCACATTGTTGAAGACCCTGAGCATGGGAACCAACCCATTGGA 10933819 Query 214031 CTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCC 214090 | |||||| || || || | | ||| || | | | || | ||| || Sbjct 10933820 CGTTCCGTTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATGCAATGCACGTTGAGTCC 10933879 Query 214091 TATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGC 214150 |||||||| || ||||||||||||||||||| || ||||| || | ||||| | Sbjct 10933880 AATGCCACCAGCAGACTTGGAGATCATGGCGCACTGCTCCACAGACTTAAAAATGCCCTC 10933939 Query 214151 CATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCC 214210 || ||| | || | | |||| | ||| || ||| ||||| || | | | | | Sbjct 10933940 GATTGAGTCGGCAGTCATGGTCAGAAGGAAACACGACGACAGCTGCGGGCGGTTTGTGGC 10933999 Query 214211 AGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTG---TTAGAGAGGAGCCTGTA 214267 || || |||||||| ||||| | |||| | | | || || || |||| Sbjct 10934000 AGCAGCAAACAGCGTGGGCGATGCATG---CGTAAAGTAGCGCTCCGATAGAAGATTGTA 10934056 Query 214268 GGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCA 214326 ||| |||| | | | || || | ||||| | || ||| | |||||||| Sbjct 10934057 GGTTTCCACGGCCGCATCTATATCCTCTCCATGGATTCCGATCGC-CACGCGCATCAGCA 10934115 Query 214327 TGTGCTGGGGCCTCTCT---ATGGGTCCTTTGGGGCCCTTGAGCAGGTAGGAGCGCTCCA 214383 | ||||| || | |||| || ||| || | |||||| || ||||| ||||||| Sbjct 10934116 TATGCTGCGGTCGCTCTGCGATCTTTCCGTTTG---TCTTGAGGAGATAGGAACGCTCCA 10934172 Query 214384 GAGTCTTGAACCCAAAGTAG 214403 ||||||| || ||||| ||| Sbjct 10934173 GAGTCTTAAAGCCAAAATAG 10934192 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 |||||| | |||||| ||||||||| | |||||| ||||| || ||| |||||| Sbjct 8385616 CTTGAGTAACTTCACACGATCCTCCAGCTTTGAGATGCGCTCCAGCTTCCGCTTGCGGCA 8385675 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| |||| |||||| || | ||||| || ||| |||||| ||||| Sbjct 8385676 CTTGGAGGCGGCCACGCGGTTGCGCTGCCTCTTGCGCTCCAGCTTGATCTTCTCCTGCGT 8385735 Query 241609 CTCCATGTCGATCGGA 241624 ||||||||||| ||| Sbjct 8385736 TTCCATGTCGATGGGA 8385751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931473135324160