Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5122 165 2e-35 >seq5122 Length=22589142 Score = 165 bits (182), Expect = 2e-35 Identities = 527/820 (64%), Gaps = 15/820 (2%) Strand=Plus/Plus Query 25496 AGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCT 25555 ||||| || ||| |||||||| ||| ||| | ||| || |||||||| | | || Sbjct 17925144 AGGCTGAAGCCTCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACT 17925203 Query 25556 GGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAG 25615 || || || | ||||||| ||||| || | ||||| |||| ||||| || | Sbjct 17925204 GGCACCGACTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCTTTCTTCGCCG 17925263 Query 25616 CCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACG 25675 |||| ||||| || || |||||||||||| ||| | |||| ||| |||||| | Sbjct 17925264 CCTCCGATGGCATCGTAAACGAGAATCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGGTCA 17925323 Query 25676 TGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGT 25735 |||||| || |||||||| |||||||| ||||| || || |||||||| ||| ||| Sbjct 17925324 CGGAGGCACGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGT 17925383 Query 25736 ATGCCAAGCTTCTGAT---GACGTACATTACAGA--CGTCGCCGAGAGAGATCGGCTGTT 25790 | || | ||||| || ||||| || || | | | ||| | ||||| Sbjct 17925384 A---CAGTGTGCTGATCGACACTTACATCCGGGATCCGAACCAGCGCGAGTAC--CTGTT 17925438 Query 25791 TGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGAT 25850 || ||||| || || | ||| | ||||| |||||| || ||||| Sbjct 17925439 CAACGCTATCGAAACGATGCCGGCTGTAAAGCGCAAGGCAGACTGGGCCCTGTCCTGGAT 17925498 Query 25851 CAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCAT 25910 | | | || || | || || ||||| | | |||||||| || ||||||||||| Sbjct 17925499 CTCCTCCAAGTCTGCCAATTTCGGGGAGCGTATCATCGCCTTTGCCGCCGTGGAGGGCAT 17925558 Query 25911 CTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGG 25970 ||| |||||||| ||||| |||| |||||||| ||| || || ||||| || Sbjct 17925559 CTTCTTCAGCGGCAGCTTTGCATCCATTTTCTGGCTTAAGAAGCGCGGTCTAATGCCTGG 17925618 Query 25971 GCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTG 26030 ||| ||| ||||||||||| ||| | |||||||| | ||| | || |||||| Sbjct 17925619 ACTGACCTTCTCCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGT 17925678 Query 26031 CCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCAT 26090 ||| | | | | ||| || | || ||| || ||| | || | ||||| Sbjct 17925679 GCTGATGTTCCAG---CACCTGGTGCAGCGACCCAAGCACGAGCGCATCATCGAGATCAT 17925735 Query 26091 CAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNT 26150 | || || |||| ||| ||| ||||||| | | Sbjct 17925736 CCGTGACGCGGTGGCGATTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTTAATTTAAT 17925795 Query 26151 GGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGC-TGT 26209 |||||||| || ||| ||| ||||| |||| || || |||| | ||| ||| Sbjct 17925796 CGGCATGAATTGTGACCTGATGTCCCAGTACATAGAGTTCGTTGCGGACCGTTTGCTTGT 17925855 Query 26210 GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACA 26269 | || |||| | | | |||||| || ||||| ||| |||| ||||| | | Sbjct 17925856 G-GAGTTGGGCGTTGGGAAGATCTACAACACCAAGAACCCCTTCAACTTCATGGAGATGA 17925914 Query 26270 TATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGT 26309 | ||| |||| || ||||||||||| ||||| |||| ||| Sbjct 17925915 TCTCGCTGGATGGAAAGACCAACTTTTTTGAGAAGAAGGT 17925954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928785307490560