Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5120 131 1e-24 seq5124 114 8e-20 seq1295 96.9 2e-14 seq5123 93.3 3e-13 seq5119 86.0 4e-11 >seq5120 Length=17746568 Score = 131 bits (144), Expect = 1e-24 Identities = 363/548 (66%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 10593469 TTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGCGTGTTCCAGCATGGAAAGGTCG 10593528 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || ||||| ||||| |||||| | || || ||||| |||||| | || || || | Sbjct 10593529 AGATCATCGCCAACGACCAGGGTAATCGTACCACTCCATCCTATGTTGCCTTCACCGATA 10593588 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || ||||| || || || | || | || || || | || | Sbjct 10593589 CGGAGCGTCTGATCGGAGACGCCGCCAAGAACCAGGTGGCGATGAACCCGACCCAGACGA 10593648 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || || || || | ||||||||||| || || ||||| || |||| || || || | Sbjct 10593649 TCTTCGACGCCAAGCGCTTGATTGGTCGCAAGTTCGATGACGCCGCTGTGCAGTCGGACA 10593708 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || ||||| | | | | ||| || || | || || | | | Sbjct 10593709 TGAAGCACTGGCCCTTCGAGGTGGTCAGCGCCGATGGCAAGCCCAAGATCGAGGTGACCT 10593768 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| | |||| Sbjct 10593769 ACAAGGATGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCGATGGTGCTCACCAA 10593826 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | |||| |||| | |||| ||| ||||| || || | || || || || Sbjct 10593827 GATGAAGGAGACCGCCGAG-GCCTATC-TGGGCAAGACTGTGACCAACGCGGTCATCACC 10593884 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || || || || || ||||| || || || || || || | || || Sbjct 10593885 GTGCCGGCCTACTTCAACGACTCGCAGCGTCAGGCGACCAAGGACGCCGGCACCATCGCC 10593944 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| || || | || || || || || || || || || || | ||||| ||||| Sbjct 10593945 GGTCTGAACGTGCTGCGCATCATCAACGAGCCTACGGCCGCTGCTATCGCTTACGGTCTG 10594004 Query 474869 GATAAGAA 474876 || ||||| Sbjct 10594005 GACAAGAA 10594012 Score = 104 bits (114), Expect = 2e-16 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 474674 TCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACA-AGAAGTAAC 474732 |||||||| | ||||||||||| | |||||| | ||||| || | || | | || Sbjct 13836146 TCAATGGTACTGGCCAAAATGAAGGAGACCGCGGAGGCTTATCTGGGCGATAGCA-TCAC 13836088 Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792 |||||||| || ||||||||||| || || || || || || ||||| || || ||||| Sbjct 13836087 AGATGCAGTCATCACTGTTCCAGCGTACTTCAACGACTCCCAGCGTCAGGCCACCAAAGA 13836028 Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852 || || ||||| || || ||||| | || || || || || || || || || || Sbjct 13836027 CGCCGGTCACATTGCCGGCCTGAATGTGCTCCGCATCATCAACGAGCCCACGGCGGCGGC 13835968 Query 474853 ACTTGCTTATGGTCTTGATAAGAA 474876 ||| || || || ||||| ||||| Sbjct 13835967 ACTGGCCTACGGACTTGACAAGAA 13835944 Score = 104 bits (114), Expect = 2e-16 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 474674 TCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACA-AGAAGTAAC 474732 |||||||| | ||||||||||| | |||||| | ||||| || | || | | || Sbjct 13838620 TCAATGGTACTGGCCAAAATGAAGGAGACCGCGGAGGCTTATCTGGGCGATAGCA-TCAC 13838678 Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792 |||||||| || ||||||||||| || || || || || || ||||| || || ||||| Sbjct 13838679 AGATGCAGTCATCACTGTTCCAGCGTACTTCAACGACTCCCAGCGTCAGGCCACCAAAGA 13838738 Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852 || || ||||| || || ||||| | || || || || || || || || || || Sbjct 13838739 CGCCGGTCACATTGCCGGCCTGAATGTGCTCCGCATCATCAACGAGCCCACGGCGGCGGC 13838798 Query 474853 ACTTGCTTATGGTCTTGATAAGAA 474876 ||| || || || ||||| ||||| Sbjct 13838799 ACTGGCCTACGGACTTGACAAGAA 13838822 >seq5124 Length=26641161 Score = 114 bits (126), Expect = 8e-20 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || | |||||| || ||||| ||||| || || ||||| || Sbjct 11019364 TTATAGTCAGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC 11019305 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||||||||| ||||| |||||||| ||||||| ||| |||||||| Sbjct 11019304 TGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCC 11019245 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || || || ||||| ||||||||||| || || Sbjct 11019244 GATGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 11019189 >seq1295 Length=1233 Score = 96.9 bits (106), Expect = 2e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| ||||| | ||| || || ||||| || || ||||| ||||| || Sbjct 651 TTATAGTCAGAAAGAGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGC 710 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| || |||||||| ||||||||||| ||||| || ||| |||||||| || Sbjct 711 TGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTAGCCTTCACATTCTCAATAGTGTCC 770 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || | | ||| ||||| || || || || || || ||||| ||||| ||||| Sbjct 771 GATGGCTCCA-CTTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTG 826 >seq5123 Length=25762168 Score = 93.3 bits (102), Expect = 3e-13 Identities = 158/224 (71%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGT--ACT--TTCTTTAGAAACATTATAATCAGCTA 480606 ||| |||||||| || | ||||| || ||| |||| || ||||| |||| | Sbjct 6600570 ACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGTATG----TTATAGTCAGAAA 6600625 Query 480607 GAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAA 480666 |||| | ||| || || ||||| || || ||||| ||||| || ||||| || || | Sbjct 6600626 GAGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGA 6600685 Query 480667 TTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTT 480725 |||| ||||||||||||||||| || ||| |||||||| || | || | | | Sbjct 6600686 TTCCCTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCA-CT 6600744 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || || || || || ||||| ||||| || || Sbjct 6600745 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTG 6600788 Score = 89.7 bits (98), Expect = 3e-12 Identities = 157/224 (70%), Gaps = 10/224 (4%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATG--AAGTGTACT--TTCTTTAGAAACATTATAATCAGCTA 480606 ||| |||||||| || | || ||||| ||| |||| || ||||| |||| | Sbjct 6598746 ACGCAGACGGAGAACCAAGTGCAAAGTGGACTCCTTCTGTATG----TTATAGTCAGAAA 6598801 Query 480607 GAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAA 480666 |||| | ||| || || ||||| || || ||||| ||||| || ||||| || || | Sbjct 6598802 GAGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGATCTGGGGGGA 6598861 Query 480667 TTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTT 480725 |||| ||||||||||||||||| || ||| |||||||| || | || | | | Sbjct 6598862 TTCCCTCCTTGTCTTGAATCTTAGCCTTCACATTCTCAATAGTGTCCGATGGCTCCACCT 6598921 Query 480726 TCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || || || || ||||| ||||| ||||| Sbjct 6598922 CCAA-AGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATTTG 6598964 >seq5119 Length=10470090 Score = 86.0 bits (94), Expect = 4e-11 Identities = 249/381 (65%), Gaps = 2/381 (1%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 ||||| || || || ||||| || ||||| || |||| ||||| ||| | || || | | Sbjct 8175286 AATCCGGACGAGGCAGTTGCCTACGGAGCAGCCATCCAGGCAGCCATTCTGTCGGG-CGA 8175344 Query 475853 TCAGACGAGAAAC-TAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCT 475911 ||| || | | || | | |||| || || || | || || || || || | Sbjct 8175345 CGAGAGCAGCCAGATCAAGGACGTCCTACTGGTCGATGTTGCCCCGCTATCGTTGGGCAT 8175404 Query 475912 TGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA 475971 ||||| | ||| || | ||||| || || ||||| | || | | || || ||||| Sbjct 8175405 CGAAACCGCTGGCGGCGTAATGACCAAGCTGATTGAACGCAACAGCCGCATTCCGTGCAA 8175464 Query 475972 AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTT 476031 | || || || |||| || | || || || | | || ||||| ||| | || Sbjct 8175465 GCAGTCCAAGACCTTCACCACGTACGCCGACAACCAGCCGGCGGTGACCATTCAAGTGTT 8175524 Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 ||| || || || |||| || || || || | || || || ||||| || Sbjct 8175525 TGAGGGCGAGAGGGCTCTCACCAAGGACAACAATGTGTTGGGCACCTTCAATCTGACTGG 8175584 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 ||||| || || ||||||||||| || |||| || ||||| || ||| | || ||||| Sbjct 8175585 CATTCCGCCCGCACCCAGAGGAGTGCCCAAAATCGACGTTACCTTCGATTTGGACGCAAA 8175644 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||||| || ||||| || || Sbjct 8175645 CGGTATCCTGAATGTGACCGC 8175665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267959406778352