Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_020200.1 Length=36429 Score E Sequences producing significant alignments: (Bits) Value seq3473 2060 0.0 seq301 854 0.0 >seq3473 Length=3319 Score = 2060 bits (2284), Expect = 0.0 Identities = 1316/1441 (91%), Gaps = 0/1441 (0%) Strand=Plus/Plus Query 29793 CCGGCCAGGCTTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACCTGGACGGTCA 29852 |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1 CCGGCCAGGCGTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACTTGGACCGTCA 60 Query 29853 GCATTGGCACCGACGGCCCGCCCGTAGTCAATGCCCGGATCATCTGGAGGCTCCAGGGCG 29912 |||||||||| |||||||||||||| |||||||| |||||| |||||| ||||||||||| Sbjct 61 GCATTGGCACGGACGGCCCGCCCGTCGTCAATGCGCGGATCGTCTGGACGCTCCAGGGCG 120 Query 29913 AGCCGGACCTGGCCCTGGTCATCACTGGCAATCGCATCATCGCCTGGACGTTCGCGCCGG 29972 |||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 121 AGCCGGACCTGGTCCTGGTCATCACCGGCAATCGCATCATCGCCTGGACCTTCGCGCCGG 180 Query 29973 ACTGGGGCGACAGCATCGTCGAACGCCTGAGCGCATCGACAAATATCCTGCAAAGCGAAT 30032 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 181 ACTGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAAT 240 Query 30033 CGGCCGTGACCCAGCGCCGAGCCATGCGCCTGGCGCCGCGCCGAGAGTTCGAAGCGAACA 30092 | ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| Sbjct 241 CAGCCGTGACCCAGCGCCGGGCTATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACA 300 Query 30093 TGTACGCGGTGGATCGCGAGCGGCAGTTGCTGGACATGACGCTGTTCGGCTGGGGTGCGC 30152 |||||||||| || |||||||||||| | ||||||||||||||||| |||||||| |||| Sbjct 301 TGTACGCGGTAGACCGCGAGCGGCAGCTCCTGGACATGACGCTGTTTGGCTGGGGCGCGC 360 Query 30153 GCATTTGGGCGCTGCCGATCTGGCCTGATATCCAGCTGCTCCACCAGCCGCTGGCGGCCG 30212 | ||||||||||||||||| |||||||||||||| |||||||| | ||||||||||||| Sbjct 361 GAATTTGGGCGCTGCCGATTTGGCCTGATATCCAACTGCTCCAAGAACCGCTGGCGGCCG 420 Query 30213 GGTCGCTGAGCATTCCGTGCGACACGGCCGGCCTCGACTTCCGCGACGGCGGTCTGGCGA 30272 | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 421 GCTCGCTGAACATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTGGCGA 480 Query 30273 TGCTGCGCGGCGAGGACGCTTTTACTTACGAGGTCGTCGAGGTCAAGACGGTGACCGCCA 30332 ||||||||||||||||||| || || || || ||||||||||||||| | ||||||||| Sbjct 481 TGCTGCGCGGCGAGGACGCCTTCACCTATGAAGTCGTCGAGGTCAAGGCAGTGACCGCCG 540 Query 30333 GCGGCCTGGACCTGGTGCGGCCCGTCCAGGCCGCGTGGGGAACTGGCTCGCGACTGTACC 30392 ||||||||||||||| || |||||||||||| | |||| |||||||||||||||||||| Sbjct 541 CCGGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGGTAACTGGCTCGCGACTGTACC 600 Query 30393 CAGTGCGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGC 30452 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CGGTGCGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGC 660 Query 30453 AGTCTGCGCGGGTGTCGTTCCTTGTGATGGAACCCAGCAGTTGGCCCGAGGTGATGCCGG 30512 |||||||||||||||||||||| | ||||| |||||| ||||||||||| ||||||| Sbjct 661 AGTCTGCGCGGGTGTCGTTCCTGATAATGGAGCCCAGCGCCTGGCCCGAGGTAATGCCGG 720 Query 30513 CGACGATGTACCGGGGGCGTCCTGTCCTGGAACAGCGCCCCGACGAAAGCGAAGACCTGA 30572 |||||| ||| ||||||| || || ||||| |||||||| ||||||||||||||||| | Sbjct 721 CGACGACCTACAGGGGGCGGCCAGTGCTGGAGCAGCGCCCGGACGAAAGCGAAGACCTCA 780 Query 30573 CGTCGAGCTATCAGCGCCTGCTGTCCACCCTGGATAACGGCAGCGCCATTCCCCGCGTGA 30632 | || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 781 CCTCCAGCTATCAGCGCCTGCTGTCCACCCTGGACAACGGCAGCGCGATTCCCCGCGTGA 840 Query 30633 CCGACGTCGCCGGCATGGCGCTGCCCGTCATCGGTCATCGCTGGATCGGCATGGGCCGAG 30692 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CCGACGTCGCCGGGATGGCGCTGCCCGTCATCGGTCATCGCTGGATCGGCATGGGCCGAG 900 Query 30693 CCGAACGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTACGCGGTCAGCAGAAGCCGCTGT 30752 |||| |||||||||||||||||||||||||||||||| || || |||||||||||||| | Sbjct 901 CCGAGCGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTGCGAGGCCAGCAGAAGCCGCTAT 960 Query 30753 GGGTGCCGACCCACGCCGACGACCTGACCCTGGTCGCCACCGTCTCGCAGCTGTCCACCG 30812 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 961 GGGTGCCGACCCACGCCGACGACCTGACCCTAGTCGCCACCGTCTCGCAGCTGTCCACTG 1020 Query 30813 CGCTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAATGGTCGGCCGGGCCGTCGCG 30872 ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| Sbjct 1021 CGCTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAATGGGCGACCGGGTCGTCGCG 1080 Query 30873 ATATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGACGCATCCTTNNNNNNNNNN 30932 |||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1081 ATATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGCCGCATTCTCACCAGCACCG 1140 Query 30933 NNNNNNNNNNNNNNNNNNAGCGCCTGGCCATCGACGCCGCCCTGGGCCGGCTGGTCGAGC 30992 ||||| ||||||||||||||||||||||||| |||||||||| Sbjct 1141 AGCTGGACGCCGACACCGAGCGCTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGC 1200 Query 30993 CTGGCGACGTGGCGCGCATTTGTTTCATGGCGCTCTGTAGCGCCGCAAGCGACGTGGTCG 31052 | ||| || |||||||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 1201 CGACCGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCAGCGACGTGGTCG 1260 Query 31053 AGATTGAGCACGTCACCGACAGCGAGGGCGTCGCCACTGCCGCCCTGACGTTCAAGGGGG 31112 ||||||||||||||||||| |||||||||||||| || ||||| ||||| ||||| |||| Sbjct 1261 AGATTGAGCACGTCACCGATAGCGAGGGCGTCGCAACCGCCGCGCTGACATTCAAAGGGG 1320 Query 31113 TTCGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGG 31172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 TTCGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGG 1380 Query 31173 CTGTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATC 31232 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 CTGTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATC 1440 Query 31233 A 31233 | Sbjct 1441 A 1441 Score = 1151 bits (1276), Expect = 0.0 Identities = 730/785 (93%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 33611 GACCGGACGCCTCGGGCGATCACTGTGCGCCGACTGATCGAGGCGCCATATCGCGAACTG 33670 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| Sbjct 2536 GACCGGACGCCTCGGGCGATCACTGTGCGCCGCCTGATCGAGGCACCCTATCGCGAACCT 2595 Query 33671 GCC---GGCGTGATCGATCC-GGCGAATCTCCAGCTCCTGGACGTGTCCGCATCCT-ACC 33725 ||| |||||||||||||| ||| ||||||||||||||||||||| ||| |||| || Sbjct 2596 GCCCCGGGCGTGATCGATCCCGGCAAATCTCCAGCTCCTGGACGTGAGCGCGTCCTTACT 2655 Query 33726 TCGCTGCGCTGGCC-GAGGCGCCGACAAGCTTGTCGCAGAGCTACACCCTGACCGACCGC 33784 | || ||||||||| ||||||||||| ||| |||||||||||||||| |||||||||||| Sbjct 2656 TGGCCGCGCTGGCCCGAGGCGCCGACCAGCCTGTCGCAGAGCTACACACTGACCGACCGC 2715 Query 33785 GTCGGCAGCTCTGGCGCGTTCGTTGATCGAGGAACCGGGGATTGGTGCCCGACCGGCCTG 33844 ||||||||||||||||||||||||||||| |||||||| || |||||||||||||| || Sbjct 2716 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGACTA 2775 Query 33845 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGGCCGAACGTGGTCACGCTGACCAACGCCAGT 33904 ||||||||||||||||||||||||||||| |||||||| |||||| |||| |||||||| Sbjct 2776 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGTCCGAACGTCGTCACGTTGACGAACGCCAGC 2835 Query 33905 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCTGTGGTTGACGACGAGATAGTCCGGGTC 33964 |||||||||||||||||||||||||||||||| || || ||||||||||||||||||||| Sbjct 2836 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCAGTCGTGGACGACGAGATAGTCCGGGTC 2895 Query 33965 GATGCCGTCAACTATGCCAGTGGCACCGTCACCCTGGCGCGCGGCTGCGCCGATACCGTG 34024 ||||| |||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct 2896 GATGCGGTCAACTACGCCAGCGGCACGGTCACCCTCGCGCGCGGCTGCGCCGATACCGTA 2955 Query 34025 CCGGCCAAGCACTTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCGGTGGAC 34084 ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2956 CCGGCCAAGCATCTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCTGTGGAC 3015 Query 34085 GAGACGGTATACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACCAACACCAGCGAG 34144 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3016 GAAACGGTCTACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACGAACACCAGCGAG 3075 Query 34145 GGCCAACTGGCCCCGGCGCTGGCCGCCACCGACAGCCTGACGCTGACCGGGCGCCAAGGT 34204 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 3076 GGCCAACTGGCCCCGGCGCTGGCCGCCACCGACAGCCTCACCCTGACCGGGCGCCAAGGT 3135 Query 34205 AAGCCGTACCCGCCCGGCCAGTTCCGCATCAACGGCAGCGCGTACCCAACGAAGGTCTAC 34264 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 3136 AAGCCGTATCCGCCCGGCCAGTTCCGCATCAACGGCAGCGCGTACCCAACGAAAGTCTAC 3195 Query 34265 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 34324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3196 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 3255 Query 34325 GATACCACTGTCGGCAACATCGGGCCCGAAGATGGGGCGACGGTGACGCTCCAGGTCTAC 34384 |||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||| ||| Sbjct 3256 GATACCACGGTCGGCAACATCGGACCCGAAGATGGGGCGACGGTTACGCTCCTGGT-TAC 3314 Query 34385 AGCGG 34389 ||||| Sbjct 3315 AGCGG 3319 >seq301 Length=948 Score = 854 bits (946), Expect = 0.0 Identities = 479/483 (99%), Gaps = 0/483 (0%) Strand=Plus/Plus Query 6379 CCGCAGACCCGCGAGCAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 6438 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 CCGCAGACCCGCGAACAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 62 Query 6439 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 6498 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 122 Query 6499 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 6558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 182 Query 6559 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACG 6618 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACA 242 Query 6619 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 6678 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 302 Query 6679 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGCACCAAGGAAGAGGTG 6738 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 303 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGCACCAAGGAAGAGGTG 362 Query 6739 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTGCCGGGGCTGACCCTG 6798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 363 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTGCCGGGGCTGACCCTG 422 Query 6799 AACACGGGCATCGAAGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 6858 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 AACACCGGCATCGAGGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 482 Query 6859 CGA 6861 ||| Sbjct 483 CGA 485 Score = 336 bits (372), Expect = 5e-88 Identities = 196/201 (98%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 7221 AGGAGGTGTGACATGGCCCGCAACCGCGCGCAACAGCTGTGCATCGTCACCTTGGATTAT 7280 |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| Sbjct 749 AGGACGTGTGACATGGCACGCAACCGCGCGCAACAGCTGTGCATCG-CACCTTGGACTAT 807 Query 7281 CAGCGCTTCCTGTTACCCCAGGCTGATGCACTCAAGCTGATAGACATCATGAGTCGAGCC 7340 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 808 CAGCGCTTCCTGTTACCCCAGGCTGATGCACTCAAGCTGATAGACATCATGAGTCGAGCC 867 Query 7341 GCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTGGGTTCAAGTACACCGTCGGCGAAGTG 7400 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 868 GCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTGGATTCAAGTACACCGTCGGCGAAGTG 927 Query 7401 CCGGAAGTCGAGTTGACGATA 7421 ||||||||||||||||||||| Sbjct 928 CCGGAAGTCGAGTTGACGATA 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116444114235608