Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_020203.1 Length=37095 Score E Sequences producing significant alignments: (Bits) Value seq3473 2109 0.0 seq301 1618 0.0 >seq3473 Length=3319 Score = 2109 bits (2338), Expect = 0.0 Identities = 1317/1439 (92%), Gaps = 0/1439 (0%) Strand=Plus/Plus Query 30447 GGCCAAGCGTCGCCGCCGCTGGGTTTTGCCGCGCTGGAGGAACGCACCTGGACGGTCAGC 30506 ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 3 GGCCAGGCGTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACTTGGACCGTCAGC 62 Query 30507 ATCGGCACCGACGGTCCGCCCGTAGTTAATGCCCGGATCGTCTGGAAGCTCCAGGGCGAG 30566 || ||||| ||||| |||||||| || ||||| ||||||||||||| ||||||||||||| Sbjct 63 ATTGGCACGGACGGCCCGCCCGTCGTCAATGCGCGGATCGTCTGGACGCTCCAGGGCGAG 122 Query 30567 CCGGACCTGGTGCTGGTCATCACCGGCAATCGGATCATCGCCTGGACGTTCGCCCCGGAC 30626 ||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 123 CCGGACCTGGTCCTGGTCATCACCGGCAATCGCATCATCGCCTGGACCTTCGCGCCGGAC 182 Query 30627 TGGGGCGACAGCATCGTCGAGCGCCTCAGCGCCTCGACAAATATTCTGCAAAGCGAATCG 30686 |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 183 TGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAATCA 242 Query 30687 GCCGTGACCCAGCGCCGAGCCATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACATG 30746 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 243 GCCGTGACCCAGCGCCGGGCTATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACATG 302 Query 30747 TACGCGGTGGACCGCGAGCGGCAGCTGCTGGACATGACGCTGTTCGGCTGGGGCGCGCGC 30806 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 303 TACGCGGTAGACCGCGAGCGGCAGCTCCTGGACATGACGCTGTTTGGCTGGGGCGCGCGA 362 Query 30807 ATTTGGGCGCTGCCGATCTGGTCTGATATCCAGCTGCTCCAGCAGCCGCTGGCGGCCGGC 30866 ||||||||||||||||| ||| |||||||||| |||||||| | ||||||||||||||| Sbjct 363 ATTTGGGCGCTGCCGATTTGGCCTGATATCCAACTGCTCCAAGAACCGCTGGCGGCCGGC 422 Query 30867 TCGCTGAGCATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTAGCGATG 30926 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 423 TCGCTGAACATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTGGCGATG 482 Query 30927 CTGCGCGGCGAGGACGCCTTCAACTATGAGGTCGTCGAGGTCAAGGCGGTGACCGTCGCC 30986 |||||||||||||||||||||| |||||| ||||||||||||||||| ||||||| |||| Sbjct 483 CTGCGCGGCGAGGACGCCTTCACCTATGAAGTCGTCGAGGTCAAGGCAGTGACCGCCGCC 542 Query 30987 GGCCTGGACCTGGTCCGCCCCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 31046 ||||||||||||||||||||||| Sbjct 543 GGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGGTAACTGGCTCGCGACTGTACCCG 602 Query 31047 NNNNNNNNNNCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCACAG 31106 |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 603 GTGCGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGCAG 662 Query 31107 TCTGCGCGGGTGTCGTTCCTGGTGATGGAGCCCAGCGCCTGGCCCGAGGTAATGCCGGCG 31166 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 663 TCTGCGCGGGTGTCGTTCCTGATAATGGAGCCCAGCGCCTGGCCCGAGGTAATGCCGGCG 722 Query 31167 ACGACCTACAGGGGGCGGCCAGTGCTGGAGCAGCGCCCGGACGAAAGCGAAGACCTCACC 31226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 723 ACGACCTACAGGGGGCGGCCAGTGCTGGAGCAGCGCCCGGACGAAAGCGAAGACCTCACC 782 Query 31227 TCTAGCTATCAGCGCCTGCTGTCCACCCTGGACAACGGCAGCGCCATTCCCCGCGTGACC 31286 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 783 TCCAGCTATCAGCGCCTGCTGTCCACCCTGGACAACGGCAGCGCGATTCCCCGCGTGACC 842 Query 31287 GACGTCGCCGGGATGGCGCTGCCCGTCATCGGCCATCGGTGGATCGGCATGGGCCGAGCC 31346 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 843 GACGTCGCCGGGATGGCGCTGCCCGTCATCGGTCATCGCTGGATCGGCATGGGCCGAGCC 902 Query 31347 GAGCGGTCGGCGTTCCGTAGCCTGGTCTATGCGCTGCGCGGCCAGCAGAAGCCGCTATGG 31406 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 903 GAGCGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTGCGAGGCCAGCAGAAGCCGCTATGG 962 Query 31407 GTGCCGACCCACGCCGACGACCTGACTCTGGTCGCCACCGTCTCGCAGCTGTCCACCGCG 31466 |||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| Sbjct 963 GTGCCGACCCACGCCGACGACCTGACCCTAGTCGCCACCGTCTCGCAGCTGTCCACTGCG 1022 Query 31467 CTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAATGGGCGACCGGGTCGTCGCGAT 31526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 CTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAATGGGCGACCGGGTCGTCGCGAT 1082 Query 31527 ATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGCCGCATTCTCACCANNNNNNNN 31586 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1083 ATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGCCGCATTCTCACCAGCACCGAG 1142 Query 31587 NNNNNNNNNNNNNNNGAGCGCTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGCCG 31646 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1143 CTGGACGCCGACACCGAGCGCTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGCCG 1202 Query 31647 ACAGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCAGCGACGTGATCGAG 31706 || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1203 ACCGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCAGCGACGTGGTCGAG 1262 Query 31707 ATCGAGCACGTCACCGATAGCGAGGGCGTCGCAACCGCCGCGCTGACTTTCAAAGGGGTT 31766 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1263 ATTGAGCACGTCACCGATAGCGAGGGCGTCGCAACCGCCGCGCTGACATTCAAAGGGGTT 1322 Query 31767 CGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGGCT 31826 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1323 CGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGGCT 1382 Query 31827 GTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATCA 31885 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1383 GTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATCA 1441 Score = 1193 bits (1322), Expect = 0.0 Identities = 739/785 (94%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 34263 GACCGGACGCCTCGGGCGGTCACCGTGCGGCGTCTGATCGAGGCGCCATATCGCGAGCTG 34322 |||||||||||||||||| |||| ||||| || ||||||||||| || |||||||| | Sbjct 2536 GACCGGACGCCTCGGGCGATCACTGTGCGCCGCCTGATCGAGGCACCCTATCGCGAACCT 2595 Query 34323 GCC---GGCGTGATCGATCC-GGCGAATCTCCAGCTCCTGGACGTGAGCGCGTCCT-ACC 34377 ||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| || Sbjct 2596 GCCCCGGGCGTGATCGATCCCGGCAAATCTCCAGCTCCTGGACGTGAGCGCGTCCTTACT 2655 Query 34378 TGGCCGCGCTGGCC-GAGGCGCCGACCAGCCTGTCGCAGAGCTACACACTGACCGACCGC 34436 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2656 TGGCCGCGCTGGCCCGAGGCGCCGACCAGCCTGTCGCAGAGCTACACACTGACCGACCGC 2715 Query 34437 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGACTA 34496 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2716 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGACTA 2775 Query 34497 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGCCCGAGCGTGGTCACGCTGACGAACGCCAGT 34556 ||||||||||||||||||||||||||||| |||| ||| |||||| ||||||||||||| Sbjct 2776 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGTCCGAACGTCGTCACGTTGACGAACGCCAGC 2835 Query 34557 CGGCTGGAGGACGTCACTGTCGGCCAGGCGGCTGCGGTGGACGACGAGATAGTCCGGGTC 34616 ||||||||||||||||||||||||||||| || | |||||||||||||||||||||||| Sbjct 2836 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCAGTCGTGGACGACGAGATAGTCCGGGTC 2895 Query 34617 GATGCGGTCAACTACGCCAGCGGCGCGGTCACCCTCGCGCGCGGCTGCGCCGATACCGTA 34676 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 2896 GATGCGGTCAACTACGCCAGCGGCACGGTCACCCTCGCGCGCGGCTGCGCCGATACCGTA 2955 Query 34677 CCAGCCAAGCATCTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCGGTGGAC 34736 || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2956 CCGGCCAAGCATCTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCTGTGGAC 3015 Query 34737 GAGACGGTATACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACCAACACCAGCGAG 34796 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3016 GAAACGGTCTACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACGAACACCAGCGAG 3075 Query 34797 GGCCAGCTCGCCCCGGCGCTGGCCGCCACCGACAGCCTCACTCTGACCGGGCGCCAGGGC 34856 ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 3076 GGCCAACTGGCCCCGGCGCTGGCCGCCACCGACAGCCTCACCCTGACCGGGCGCCAAGGT 3135 Query 34857 AAGCCGTATCCGCCCGGCCAGTTCCGAATCAACGGCAGCGCGTACCCGACGAAGGTCTAC 34916 |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||| Sbjct 3136 AAGCCGTATCCGCCCGGCCAGTTCCGCATCAACGGCAGCGCGTACCCAACGAAAGTCTAC 3195 Query 34917 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGCATCGGCCAGGCCGACCAGTTGATC 34976 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 3196 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 3255 Query 34977 GATACCACTGTCGGCAACATCGGGCCCGAAGATGGGGCGACGGTGACGCTCCAGGTCTAC 35036 |||||||| |||||||||||||| |||||||||||||||||||| ||||||| ||| ||| Sbjct 3256 GATACCACGGTCGGCAACATCGGACCCGAAGATGGGGCGACGGTTACGCTCCTGGT-TAC 3314 Query 35037 AGCGG 35041 ||||| Sbjct 3315 AGCGG 3319 >seq301 Length=948 Score = 1618 bits (1794), Expect = 0.0 Identities = 928/947 (98%), Gaps = 1/947 (0%) Strand=Plus/Plus Query 6647 CCGCAGACCCGCGAGCAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 6706 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 CCGCAGACCCGCGAACAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 62 Query 6707 CTGGCTCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 6766 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 122 Query 6767 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGGGTCCAGTCCTGG 6826 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 123 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 182 Query 6827 TGTGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAAGTCAAGTACGCAAACCTCACT 6886 || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 183 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACA 242 Query 6887 ACCGGAGAGGTCCAATGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 6946 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 302 Query 6947 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGTTTCATCCGCGTCAAGGAAGAGGTG 7006 ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 303 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGCACCAAGGAAGAGGTG 362 Query 7007 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTTCCGGGGCTGACCGTG 7066 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 363 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTGCCGGGGCTGACCCTG 422 Query 7067 AACTCCGGCATCGAGGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 7126 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 AACACCGGCATCGAGGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 482 Query 7127 CGACACCATCGCTTTCTGCTGGGCCTCTGGCCTGATCCAGTTCGGTGACCAGGTGCCCGA 7186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 CGACACCATCGCTTTCTGCTGGGCCTCTGGCCTGATCCAGTTCGGTGACCAGGTGCCCGA 542 Query 7187 GGGCGCCATCGAGATTGCCCGTGGGGACGACCAGGTCGTTCGCGAAATCCTCGTGACCAA 7246 ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct 543 GGGCGCCATCGAGATCGCCCGTGGGGACGACCAGGTCGTTCGCGAAAACCTCGTGACCAA 602 Query 7247 TTCGCGGCACGCTTACGACAACGTGTCGCTCCTGGTTCCGGGCGTACCCGAAGCGGCAAA 7306 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 TTCGCGGCACGCTTACGACAACGTGTCGCTCCTGGTTCCGGGCGTACCCGAAGCGGCAAA 662 Query 7307 CCAAACCGAGGGCGGGGACGCACTGGAGTGCTTCATCCGTCTTCTCGCCAAGTACGACAG 7366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 CCAAACCGAGGGCGGGGACGCACTGGAGTGCTTCATCCGTCTTCTCGCCAAGTACGACAG 722 Query 7367 CGCCGCTTTCCAGGTCGCTTATGTGGAGGACGTGTGACATGGCACGCAACCGCGCGCAAC 7426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 723 CGCCGCTTTCCAGGTCGCTTATGTGGAGGACGTGTGACATGGCACGCAACCGCGCGCAAC 782 Query 7427 AGCTGTGCATCGTCACCTTGGACTATCAGCGCTTCCTGTTACCCCAGGCTGATGCACTCA 7486 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 783 AGCTGTGCATCG-CACCTTGGACTATCAGCGCTTCCTGTTACCCCAGGCTGATGCACTCA 841 Query 7487 AGCTGATAGACATCATGAGTCGAGCCGCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTG 7546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 842 AGCTGATAGACATCATGAGTCGAGCCGCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTG 901 Query 7547 GGTTCAAGTACACCGTCGGCGAAGTGCCGGAAGTCGAGTTGACGATA 7593 | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 902 GATTCAAGTACACCGTCGGCGAAGTGCCGGAAGTCGAGTTGACGATA 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118575184557416