Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5124 194 2e-44 seq5122 89.7 6e-13 >seq5124 Length=26641161 Score = 194 bits (214), Expect = 2e-44 Identities = 710/1090 (65%), Gaps = 44/1090 (4%) Strand=Plus/Minus Query 75904 GGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAA 75963 ||| ||||||| || || ||||| | |||||| ||||| |||| |||||| ||||| | Sbjct 10933430 GGAAACTGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCA 10933371 Query 75964 GAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAA 76023 |||| | || || |||||| || || | ||||||||||| | || ||| | | Sbjct 10933370 GAATGTTGGCACCATCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATACTCCGCGCC 10933311 Query 76024 GGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGA 76083 |||||||| ||||| ||||| |||||||| || ||||| | || ||||| || Sbjct 10933310 GGATGAGATAGCTGTCTGCAACTTGGCATCCATTGCCCTCAACATGTTTGTCACACCGGA 10933251 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 || || | ||||| | || || | ||| |||| ||||| ||||||| |||||| Sbjct 10933250 GA---AGACGTATGATTTCAAGAAGCTCAAGGAAGTCACCAAGATAGTTACCAGAAATCT 10933194 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTG--AGACTGCGCGAAAGTCTAATATG 76201 |||| | ||||| | || | ||||||| ||| ||| || | ||||| ||| || Sbjct 10933193 AAACAAGATAATTGATATCAACTATTATCCC-TTGCCAGA-GGCAAGGAAGTCAAATTTG 10933136 Query 76202 CGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGC 76261 | ||| | || | || | ||| |||| || |||| || | || ||| | || Sbjct 10933135 AGGCACCGTCCCGTGGGCATAGGTATTCAGGGATTCGCTGACGCCTTGATTCTCATGCGA 10933076 Query 76262 TACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTAT 76321 | | | | ||| || |||||| | ||||| | || || |||||||| || Sbjct 10933075 TTCCCGTATGAAAGTGAAGAAGCCGGTCTGTTGAATCAGCAGATATTCGAAACCATTTAC 10933016 Query 76322 CACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTT 76381 | | | || |||| || || |||||| |||| | || |||| | || || || | | Sbjct 10933015 TATGGAGCCTTGGAAGCCAGCTGTGAACTGGCCCAGACCGAAGGCCCTTACGAAACCTAT 10932956 Query 76382 GAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG--AAGGT-GAAACC 76438 ||||| || | | | | || | | |||| || ||||||| ||||| ||| Sbjct 10932955 GAGGGCAGCCCGGTGAGCAAGGGAATTTTGCAGTACGACATGTGGGACAAGGTCCCAACG 10932896 Query 76439 AAGCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAAC 76498 || || | |||||| | || ||||| ||||||| || | ||| | || ||| Sbjct 10932895 AACCT---TTGGGACTGGCAGAAACTGAAGGAGTCCATCAAGAAGCACGGTGTCCGCAAC 10932839 Query 76499 AGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 76558 || || | || |||||||| || || || || || ||||| |||| || |||||| Sbjct 10932838 TCCCTGCTGGTTGCTCCAATGCCCACTGCATCTACAGCTCAAATAATGGGCAACAATGAA 10932779 Query 76559 TGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTC 76618 | ||| || || || || || ||||| ||| || || || | || |||||| Sbjct 10932778 TCCTTCGAGCCCTATACCACGAACATATACACCAGGCGAGTTCTGTCCGGCGAGTTTCAG 10932719 Query 76619 ATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATG 76678 | |||||| | || | | ||||| | || | | | ||| | | || ||| Sbjct 10932718 GTGGTCAACCATCATTTGTTGCGCGACCTAACAGAGCTGGACTTGTGGGACGACGACATG 10932659 Query 76679 AAGGATCTCATGGT-GAAAGCGGGTGGTTCCATTCAAAATATCTCAG---ATATCCCAGA 76734 ||| | | || | ||| || || || || ||||| || | || || |||||| Sbjct 10932658 AAGAACCAGATCATATCCAGCAGG-GGCTCAATCCAAAACAT-TGAGGCCATCCCCCAGA 10932601 Query 76735 TGATATCAAGAATCTCTACCGCACAGTGTGGGAAATC-AAGATGAAAGATGTC-ATTGAC 76792 | | || | |||| ||| || |||||||||||| || | ||| | ||| | Sbjct 10932600 GGGT-TCGCG-ATCTGTACAAGACGGTGTGGGAAATCTCAGTT--AAGTCCACGATTAAA 10932545 Query 76793 ATGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCAT---G 76849 |||||||| || |||||| ||||| ||||| ||||| | || |||||| | Sbjct 10932544 ATGGCCGCCGACCGTGGTGCGTTCATAGATCAGAGTCAGTCGTTCAA--CATTCATGTGG 10932487 Query 76850 GAAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTC 76909 | || ||||| ||| || || | || || || | ||| | |||||| || || Sbjct 10932486 CAGAGCCCAACTATG-GAAAACTGACCTCCATACACTTTTACTCCTGGAAAGCTGGTCTT 10932428 Query 76910 AAAACCGGAATGTACTATCTCCGATCAAAG------GCGAAAGCCCGACCAATTCAGTTC 76963 |||||||||||||||||||| || ||||| ||||| ||| ||||||||| Sbjct 10932427 AAAACCGGAATGTACTATCTGCGCACAAAGCCAGCTGCGAATGCC------ATTCAGTTC 10932374 Query 76964 AGCCTTGAAC 76973 | || ||||| Sbjct 10932373 A-CCGTGAAC 10932365 >seq5122 Length=22589142 Score = 89.7 bits (98), Expect = 6e-13 Identities = 179/263 (68%), Gaps = 2/263 (1%) Strand=Plus/Plus Query 14340 AGCGCTCTATTGCCCATATGGCGGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATG 14399 ||||||| ||| | | | | |||||| | ||||| ||| |||||||||||| Sbjct 4846747 AGCGCTCCATTCCTAGTCTAGTGGATGGCTTAAAGCCGGGTCAGCGGAAAGTGATGTTCA 4846806 Query 14400 CTTGCTTCCATAAGAATCTCAAGGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCG 14459 ||||||| | | || |||| ||| ||||||| || || || | | || || | Sbjct 4846807 CTTGCTTTAAGAGAAACGACAAGCGTGAGGTGAAGGTAGCCCAGCTATCCGGATCGGTGG 4846866 Query 14460 CGGACAAGTCTGCGTACCACCATGGTGAAGTATCCTTAGCGGA-CACGATTGTTAAGTTG 14518 | || | ||| || |||||||| || || |||||| | || || || || || || || Sbjct 4846867 CAGAGATGTCGGCCTACCACCACGGAGAGGTATCCCT-GCAGATGACAATCGTGAATCTG 4846925 Query 14519 GCAAACGACTACACGGGTTCAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGT 14578 || | | | |||| | |||||||| || || ||||| || | |||||||||||| Sbjct 4846926 GCCCAGAATTTTGTGGGTGCCAACAACATCAATCTGCTTGAGCCACGCGGTCAATTTGGT 4846985 Query 14579 ACGCGTCTCATGGGTGGTAAGGA 14601 || || | | ||| ||||| || Sbjct 4846986 ACCCGCTTGACGGGAGGTAAAGA 4847008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596531389717120