Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5121 125 2e-23 seq5124 93.3 1e-13 seq5120 89.7 2e-12 >seq5121 Length=18748788 Score = 125 bits (138), Expect = 2e-23 Identities = 191/268 (71%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| || ||||| ||| || ||| |||||||| ||| Sbjct 3700917 TCCATAGCCTTTATAAGACGACGCTGGATGTAACCGGTTTCAGCTGTCTTTACAGCAGTA 3700858 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| | ||||||||||| || ||||| | | ||| || || || Sbjct 3700857 TCGATAAGACCCTCGCGACCACCCATGGCGTGGAAATAGAACTCAGAGGGAGTCAGGCCA 3700798 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | | || ||||||| ||||| || | ||| || || ||||||| ||| || Sbjct 3700797 GCAAGATACGAATTCTCAACAAAACCGCGGGACTCAGGACCGTAATCGTC---TTTGATA 3700741 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 ||||| || || || | || | ||||| ||||| ||||| || || ||||||||| Sbjct 3700740 AAGTGGGGAAGAGTGCGCTTGCGGAAACCGTAGGGGATTCGCTTACCCTCCACGTTCTGC 3700681 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAA 302839 || |||| ||| | ||| | ||| |||| Sbjct 3700680 TGACCCACGCAAGCAATAACCTG-GAAA 3700654 >seq5124 Length=26641161 Score = 93.3 bits (102), Expect = 1e-13 Identities = 481/756 (64%), Gaps = 21/756 (3%) Strand=Plus/Plus Query 155405 GTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT 155464 ||| || || ||||||| || || || || || || ||||| |||| | | |||| Sbjct 10933094 GTCAGCGAATCCCTGAATACCTATGCCCACGGGACGGTGCCTCAAATTTGACTTCCTTGC 10933153 Query 155465 CTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTT---GTAACCAATA 155520 || || | ||| ||| | || | |||||| || || |||| |||| ||||| || Sbjct 10933154 CT-CTGGCAAGGGATAATAGTTGATATCAATTATCTTGTTTAGATTTCTGGTAAC---TA 10933209 Query 155521 CCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTACAAACATAC 155580 |||||| || || | ||| | ||| | || || ||| | |||||||| Sbjct 10933210 TCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTCTCCGGTGTGACAAACATGT 10933269 Query 155581 CAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACA 155639 || |||| || |||| || || || || |||| | | || || |||||| || Sbjct 10933270 TGAGGGCAATGGATGCCAAGTTGCAGACAGCTATCTCATCCGGCG-CGGAGTATTCAACG 10933328 Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 || || ||||| ||| | |||||||||||| | ||||| |||||| || ||| Sbjct 10933329 ATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTG 10933388 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 || ||||| |||||| | || ||||| || |||| || |||| || || || | || Sbjct 10933389 TTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTGCGCCTCAATGATG 10933448 Query 155760 TTTAGCCAGAGGTCACGGGCATTAA---TTTGCTTGTTGTATCTGCCTTCCGACTCATAT 155816 ||| ||| | || |||| || | |||| || || || ||| ||| Sbjct 10933449 GCATACCACAGGGATTGAGCCTTAACCGTTCG---GTTGGCTCGACCCTCTTGCTCGTAT 10933505 Query 155817 TTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCG 155876 ||| ||||||| || | | || || || | ||| || |||||||| || | | Sbjct 10933506 TTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCAGGGCATTTGTGG 10933565 Query 155877 GGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936 ||||| | ||||||||| || | || |||| ||| || | ||| | Sbjct 10933566 GGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGCTTCATGAAGAGATCGGGTATC 10933625 Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCG-CCGTGATTCTTCCGTAG 155995 || | ||| || || || || | || ||| || | | ||||| || ||| ||| Sbjct 10933626 CACAGAGCGTAAAACAGATCGCGGGCGCGATTCTCTTCCTTGCCCGTG-TTTTTCTTTAG 10933684 Query 155996 CTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATT 156055 || | ||| || | ||| | || |||||||| || || ||||| ||| Sbjct 10933685 TTCGAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGG 10933744 Query 156056 CCTCTT---GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGG 156112 | ||| ||| ||||| || ||||| || || || |||||||| | ||||| || Sbjct 10933745 ACGCTTGCCGCCTCCCTGGTCCACATAACGCGCCACATTGTTGAAGACCCTGAGCATGGG 10933804 Query 156113 AATAATACCATTGGAAGTGCCATTGGTTCCGCGAAT 156148 || | |||||||| || || || || |||| ||| Sbjct 10933805 AACCAACCCATTGGACGTTCCGTTTGTGCCGCAAAT 10933840 >seq5120 Length=17746568 Score = 89.7 bits (98), Expect = 2e-12 Identities = 110/145 (76%), Gaps = 4/145 (3%) Strand=Plus/Minus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 || ||||||||| ||| ||||| || || || |||||||| |||||| || || || Sbjct 9503742 ATTGTCATACGAGAGGGGATAGCGTGAGGGTTAATGATGATATCGGGTGCCAAGCCCTC- 9503684 Query 251905 GCAG-TGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCCGT 251962 |||| |||||| |||||||| || | || || |||| ||||||||||| |||| Sbjct 9503683 GCAGGTGAAGGCCATATCCTCTTGG-CGGTACTGGATTCCGCACGTTCCCTTTTGCCCGT 9503625 Query 251963 GACGAGAACTGAACTTATCACCAAT 251987 |||||||| ||||||||| || || Sbjct 9503624 GACGAGAAGCGAACTTATCGCCGAT 9503600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471720973334788