Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5122 132 6e-25 seq5118 132 6e-25 seq5123 118 1e-20 seq5124 102 1e-15 >seq5122 Length=22589142 Score = 132 bits (146), Expect = 6e-25 Identities = 172/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| | |||||| |||||||||||||||||||| ||| | |||| | || | Sbjct 17925377 CCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCGTAGAAGCAGCGTGCCTCCGTGACCT 17925318 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||||| |||| || | |||| |||||| |||||||| ||| |||||||| Sbjct 17925317 GCACCTCCTGACTGAAGCGCTCCACCAGATTCTCGTTTACGATGCCATCGGAGGCGGCGA 17925258 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT--G 869808 | |||||||| |||||| ||| || |||||||||||||| | || ||||| | Sbjct 17925257 AGAAAGCCAGCACGTGCGAGATGAAATGGCGCTCGTCGTCCTTCAGTCGGTGCCAGTCAG 17925198 Query 869809 GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 | | ||| | | |||||||||||| ||||||||| ||||| || |||| Sbjct 17925197 TAAG--GTCCTTGGACAAATCCACCTCCTCGACGGTCCAGAAAGAGGCTTCAGCCT 17925144 Score = 111 bits (122), Expect = 2e-18 Identities = 193/276 (70%), Gaps = 5/276 (2%) Strand=Plus/Minus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | || ||||||||| ||| | |||||| |||| || || ||||| || ||| Sbjct 17925663 TGCAAGCCCTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGTCCAGGCATTAGACCG 17925604 Query 869234 CGCTTCTTGAGCCAAAAGATGGC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGC 869292 |||||||| ||||| || |||| ||| || ||||| ||| ||||||||||| ||||| Sbjct 17925603 CGCTTCTTAAGCCAGAAAATGGATGCA-AAGCTGCCGCTGAAGAAGATGCCCTCCACGGC 17925545 Query 869293 GGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCAT 869352 ||||||| |||||| ||||| | || || | || || | |||||| || Sbjct 17925544 GGCAAAGGCGATGATACGCTCCCCGAAATTGGC-AG--ACTTGGAGGAGATCCAGGACAG 17925488 Query 869353 CGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTC 869412 |||||||| ||||| | | || | ||||| ||| ||||| ||| || |||| || Sbjct 17925487 GGCCCAGTCTGCCTTGCGCTTTACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTC 17925428 Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAG 869448 | | ||| ||| || || ||||||||||| Sbjct 17925427 GCGCTGGTTCGGATCCCGGATGTAAGTGTCGATCAG 17925392 Score = 105 bits (116), Expect = 8e-17 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| || ||||| || | |||||| || || | | || || ||| || Sbjct 17767393 AGAAGCGCACGGATGACATTTCATCCTGGGACGCCGACTTCCTCAAAGTGGATCAGGGCA 17767452 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 | || || || |||||||||| || |||||||| ||||| || |||||| ||| | Sbjct 17767453 CTCTGTTCGAACTGATCCTCGCGGCTAACTACCTGAACATCCAGGGTCTGCTTGATGTCA 17767512 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | |||||||| |||||||||||||| | || |||| || ||| | |||| Sbjct 17767513 CCTGCAAGACGGTGGCCAATATGATCAAGGGCAAAACACCGCAGGACATTCGCGACACCT 17767572 Query 1592286 T 1592286 | Sbjct 17767573 T 17767573 Score = 96.9 bits (106), Expect = 4e-14 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1592132 TGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCC 1592191 |||||| |||||| | | | || ||| ||| ||||| ||| | ||||| || ||| Sbjct 20711172 TGGGACGCGGAGTTCCTGGCCATGGATCAGGGCACTCTCTTCGAGCTCATCCTGGCGGCC 20711113 Query 1592192 AACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATC 1592251 |||||||| ||||| | |||||| | | |||| | | ||||||||||||||| Sbjct 20711112 AACTACCTGGACATGCGGAATCTGCTGAACGCCGCCTGCATGACGGTGGCCAACATGATC 20711053 Query 1592252 AAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 |||||| | || | |||||||| ||| |||||||| |||| Sbjct 20711052 AAGGGCCACACGGCGGAGGAGATTCGCCAGACCTTTCACAT 20711012 Score = 93.3 bits (102), Expect = 5e-13 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 |||||| |||| | ||| |||||||||||||| || || |||||||||| |||||| Sbjct 17925964 GTACTCTGCCACCTTCTTCTCAAAAAAGTTGGTCTTTCCATCCAGCGAGATCATCTCCAT 17925905 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| ||||| || |||||| ||| | || | | | | |||| || Sbjct 17925904 GAAGTTGAAGGGGTTCTTGGTGTTGTAGATCTTCCCAACGCCCAACTCCACAAGCAAACG 17925845 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 ||| || || ||||| ||||||||| |||| ||| | ||||||||||| | || Sbjct 17925844 GTCCGCAACGAACTCTATGTACTGGGACATCAGGTCACAATTCATGCCGATTAAATTAAC 17925785 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 ||||| | ||| | | ||||| | ||| ||| | || || || |||||||| Sbjct 17925784 GGGCAGGGCATCGGTGAGGAACTCCTGCTCAATCGCCACCGCGTCACGGATGATCT 17925729 >seq5118 Length=2521924 Score = 132 bits (146), Expect = 6e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 |||||||||| |||||||| | ||||| ||| || | || || ||| || Sbjct 507482 AGAAGCGCACAGACGACATTATCTCTTGGGATGCGGACTTCCTGAAGGTGGATCAGGGCA 507541 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 || | |||||| | ||||| || |||||||| || ||||||||| || || || || Sbjct 507542 CCTTGTTTGAGCTCATCCTGGCTGCCAACTATCTGGACATCAAGGGCCTCCTGGAGCTCA 507601 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| |||| || |||||||||||||||||| | ||||||||||| |||||||||| Sbjct 507602 CCTGCAAGACTGTTGCGAACATGATCAAGGGCAAGACTCCCGAGGAGATTCGCAAGACCT 507661 Query 1592286 TTAACATCAAG 1592296 | ||||| ||| Sbjct 507662 TCAACATAAAG 507672 >seq5123 Length=25762168 Score = 118 bits (130), Expect = 1e-20 Identities = 206/296 (70%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 |||||| || || ||||||||| || | ||| ||||||||| | | ||| |||| Sbjct 6844808 GGGTCCTCCTGGTGTGGGCAAGACAACCACCATACAGTGTCTGGCTAGGATTCTCCTGGG 6844749 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 | | | | ||||| |||||||| || || || || | ||||| || |||| || Sbjct 6844748 AGACAGCTACAAGGAGGCTGTGCTCGAGCTGAATGCCTCCAATGAGCGTGGAATCGATGT 6844689 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTC-CAAGAGGATCGAC-CTGCCGCCCGGACGC 1574072 || ||||| | |||||| ||| ||| ||| ||| ||||||| || | Sbjct 6844688 GGTCCGCAACAAGATCAAGATGTTTGCCCAGCAAAAGGT--GACACTGCCGCGGGGCAGG 6844631 Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132 |||||| | | || || |||||||| ||| || | ||| || ||||||||||| ||| Sbjct 6844630 CACAAGATTGTGATTCTGGACGAGGCTGACAGCATGACGGAGGGTGCCCAGCAGGCACTG 6844571 Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACAC 1574188 || |||||||| | ||| || ||| ||||| ||||||||||| |||||||| Sbjct 6844570 CGCCGAACCATGGAGATCTACAGCAGCACAACGCGTTTTGCCCTGGCCTGCAACAC 6844515 >seq5124 Length=26641161 Score = 102 bits (112), Expect = 1e-15 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 1628407 GGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTC 1628466 || || | ||||||||| || || || | || |||| ||| ||||| || || Sbjct 10933566 GGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGCTTCATGAAGAGATCGGGTATC 10933625 Query 1628467 CACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGG 1628526 ||||| |||||||| || ||||| || || ||||| |||||||| ||| || || || Sbjct 10933626 CACAGAGCGTAAAACAGATCGCGGGCGCGATTCTCTTCCTTGCCCGTGTTTTTCTTTAGT 10933685 Query 1628527 TCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTG 1628586 ||||| | || | | || | |||||| ||||||||||| ||||||||| || Sbjct 10933686 TCGAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGA 10933745 Query 1628587 CGCTTGCCGCCGCC 1628600 ||||||||||| || Sbjct 10933746 CGCTTGCCGCCTCC 10933759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106718700564308