Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5121 158 1e-33 seq5123 89.7 4e-13 >seq5121 Length=18748788 Score = 158 bits (174), Expect = 1e-33 Identities = 167/218 (77%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 |||| ||| | | | ||||| |||||||||||||| || || ||||| || || || || Sbjct 11167761 TTGTGATCAAACAGTGTTTGGGCGCCCAGCTCGCAACCAAAATACTTGGTTGGATAGGTG 11167702 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 ||||| ||||| | ||| | || | ||| | |||||| || | || |||||||||||| Sbjct 11167701 GCCGGGCGTCCGATGGCCCTAGCCACTTCCGCCATGTTAACCAGCACGGTCTTGATGCCG 11167642 Query 34552 TTGCCCTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGT 34609 || ||||| || |||||||| || ||||| || ||||| |||||||| ||||| || Sbjct 11167641 TTTCCCTTGCCCTCGACCTTTGCCTGCAGA--CGTGGCATCTTGTAGCGATAGAAGATGT 11167584 Query 34610 CCGCCACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 ||| |||| ||||||| ||||| || || ||||| || Sbjct 11167583 CCGTCACACTGCGGTTTACGTTAACGGTGGCCATCTTG 11167546 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/190 (72%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGT-AGCGTGCCGTGAT 34261 ||| ||||| |||| || || ||||| | || || | || | | ||| ||||| Sbjct 11168052 CGGAGGGTTCTTCACGATAAATGTGTTCACTTTGTG-GTTAACTTTGAGCAGCCCGTGGA 11167994 Query 34262 AACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAG 34321 | |||||||| ||||| ||| | || | | ||||| || ||||| | || | | Sbjct 11167993 AGCCGCATGCCTTGCAAGACTGCGAAATGGTCTGGTTTTTGGCCGACACAGTTAGATTGG 11167934 Query 34322 TCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGT 34381 ||||||| ||||| ||||| || || |||||||||||||| || || ||||| | || | Sbjct 11167933 TCTCCGGATTGTCGCATTCGGGGCATAACACAAACTTGCGAATAAAGCCATCCAACAAAT 11167874 Query 34382 CCTGTAACTT 34391 |||||||||| Sbjct 11167873 CCTGTAACTT 11167864 >seq5123 Length=25762168 Score = 89.7 bits (98), Expect = 4e-13 Identities = 107/140 (76%), Gaps = 4/140 (3%) Strand=Plus/Minus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 || |||||||| |||||||||||||| || || |||| || ||||||||| | ||| || Sbjct 11112069 GGTCTGCACGGATTCCACGTGCACGAGTTCGGAGACAACACCAACGGCTGCATGTCGTCC 11112010 Query 107231 GGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAA-AGGC 107288 || ||||||||| || ||| ||| | ||||| || |||| || || |||| | | Sbjct 11112009 GGACCGCACTTCAAT-CCGCATGGCAAGGAGCACGGCGCTCCCGTCGACG-AGAACCGTC 11111952 Query 107289 ACGTCGGCGATCTGGGCAAC 107308 || | |||||| |||||||| Sbjct 11111951 ACCTGGGCGATTTGGGCAAC 11111932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || || | || ||||| ||||| ||| ||||| |||||| Sbjct 6598511 ATGCAAATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAAGTGGAGCCATCG 6598452 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | || || ||||| ||||| || || | ||| ||||| Sbjct 6598451 GACACTATTGAGAATGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCCCCAGATCAG 6598392 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || |||| || || |||||||| ||||||| | || || | ||||||||| Sbjct 6598391 CAGCGTCTGATTTTCGCCGGCAAACAGCTCGAGGATGGACGCACCTTGTCCGATTACAAC 6598332 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || || || || || |||||| ||||| | | || || || |||| Sbjct 6598331 ATCCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTCCGCGGAGGAA 6598283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412815818558132