Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5124 154 1e-32 seq5123 107 1e-18 >seq5124 Length=26641161 Score = 154 bits (170), Expect = 1e-32 Identities = 167/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 ||||||||||| || || ||||| || || ||||||||||| || | | ||||||| | Sbjct 11019400 CGCAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGACCA 11019341 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | |||| | |||||||| || ||||| || |||||| Sbjct 11019340 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 11019281 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| || | ||||||| |||| | ||| || || |||| || |||||||| || Sbjct 11019280 TCCTG-AATCTTGGCTTTGACATTTTCGATAGTATCCGATGGTTCGACCTCAAGAGTGAT 11019222 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || | ||| ||||| || |||||||| || Sbjct 11019221 GGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 11019183 >seq5123 Length=25762168 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || ||||| ||||| || || || || || ||||| ||||| | Sbjct 6601021 CCACCACGCAGACGGAGAACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGAC 6601080 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || || || ||||| ||| | |||| | |||||||| || ||| Sbjct 6601081 AGGGTGCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGA 6601140 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| || || || ||| || | || ||| | || | || || || | || || Sbjct 6601141 ATTCCCTCCTTATCCTG-AATCTTGGCCTTCACATTCTCGATGGTATCCGAGGGCTCCAC 6601199 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || | ||| || || || ||||| ||||| || ||||| ||||||||||| Sbjct 6601200 CTCCAAAGTGATTGTCTTTCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 6601250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385195143542484