Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_024782.1 Length=36838 Score E Sequences producing significant alignments: (Bits) Value seq3473 2158 0.0 seq301 829 0.0 >seq3473 Length=3319 Score = 2158 bits (2392), Expect = 0.0 Identities = 1343/1441 (93%), Gaps = 0/1441 (0%) Strand=Plus/Plus Query 30201 CCGGCCAGGCTTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACCTGGACGGTCA 30260 |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 1 CCGGCCAGGCGTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACTTGGACCGTCA 60 Query 30261 GCATTGGCACCGACGGCCCGCCCGTAGTCAATGCCCGAATCATCTGGAGGCTCCAGGGCG 30320 |||||||||| |||||||||||||| |||||||| || ||| |||||| ||||||||||| Sbjct 61 GCATTGGCACGGACGGCCCGCCCGTCGTCAATGCGCGGATCGTCTGGACGCTCCAGGGCG 120 Query 30321 AGCCGGACCTGGCCCTGGTCATCACTGGCAATCGCATCATCGCCTGGACGTTCGCGCCGG 30380 |||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 121 AGCCGGACCTGGTCCTGGTCATCACCGGCAATCGCATCATCGCCTGGACCTTCGCGCCGG 180 Query 30381 ACTGGGGCGACAGCATCGTCGAACGCCTGAGCGCATCGACAAATATCCTGCAAAGCGAAT 30440 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 181 ACTGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAAT 240 Query 30441 CGGCCGTGACCCAGCGCCGAGCCATGCGCCTGGCGCCGCGCCGAGAGTTCGAAGCGAACA 30500 | ||||||||||||||||| || |||||||||||||||||||| |||||||||||||||| Sbjct 241 CAGCCGTGACCCAGCGCCGGGCTATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACA 300 Query 30501 TGTACGCGGTGGATCGCGAGCGGCAGTTGCTGGACATGACGCTGTTCGGCTGGGGTGCGC 30560 |||||||||| || |||||||||||| | ||||||||||||||||| |||||||| |||| Sbjct 301 TGTACGCGGTAGACCGCGAGCGGCAGCTCCTGGACATGACGCTGTTTGGCTGGGGCGCGC 360 Query 30561 GCATTTGGGCGCTGCCGATCTGGCCTGATATCCAGCTGCTCCAGGAACCGCTGGCGGCCG 30620 | ||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| Sbjct 361 GAATTTGGGCGCTGCCGATTTGGCCTGATATCCAACTGCTCCAAGAACCGCTGGCGGCCG 420 Query 30621 GGTCGCTGAGCATTCCGTGCGACACGGCCGGCCTCGACTTCCGCGACGGCGGTCTGGCGA 30680 | ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 421 GCTCGCTGAACATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTGGCGA 480 Query 30681 TGCTGCGCGGCGAGGACGCTTTTACTTACGAGGTCGTCGAGGTCAAGACGGTGACCGCCA 30740 ||||||||||||||||||| || || || || ||||||||||||||| | ||||||||| Sbjct 481 TGCTGCGCGGCGAGGACGCCTTCACCTATGAAGTCGTCGAGGTCAAGGCAGTGACCGCCG 540 Query 30741 GCGGCCTGGACCTGGTCCGGCCCGTCCAGGCCGCGTGGGGAACTGGCTCGCGACTGTACC 30800 |||||||||||||||||| |||||||||||| | |||| |||||||||||||||||||| Sbjct 541 CCGGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGGTAACTGGCTCGCGACTGTACC 600 Query 30801 CGGTGCGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGC 30860 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CGGTGCGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGC 660 Query 30861 AGTCTGCGCGGGTGTCGTTCCTTGTGATGGAACCCAGCAGTTGGCCCGAGGTGATGCCGG 30920 |||||||||||||||||||||| | ||||| |||||| ||||||||||| ||||||| Sbjct 661 AGTCTGCGCGGGTGTCGTTCCTGATAATGGAGCCCAGCGCCTGGCCCGAGGTAATGCCGG 720 Query 30921 CGACGATGTACCGGGGGCGTCCTGTCCTGGAACAGCGCCCCGACGAAAGCGAAGACCTGA 30980 |||||| ||| ||||||| || || ||||| |||||||| ||||||||||||||||| | Sbjct 721 CGACGACCTACAGGGGGCGGCCAGTGCTGGAGCAGCGCCCGGACGAAAGCGAAGACCTCA 780 Query 30981 CGTCGAGCTATCAGCGCCTGCTGTCCACCCTGGATAACGGCAGCGCCATTCCCCGCGTGA 31040 | || ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 781 CCTCCAGCTATCAGCGCCTGCTGTCCACCCTGGACAACGGCAGCGCGATTCCCCGCGTGA 840 Query 31041 CCGACGTCGCCGGCATGGCGCTGCCCGTCATCGGTCATCGCTGGATCGGCATGGGCCGAG 31100 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 CCGACGTCGCCGGGATGGCGCTGCCCGTCATCGGTCATCGCTGGATCGGCATGGGCCGAG 900 Query 31101 CCGAACGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTACGCGGCCAGCAGAAGCCGCTGT 31160 |||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| | Sbjct 901 CCGAGCGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTGCGAGGCCAGCAGAAGCCGCTAT 960 Query 31161 GGGTGCCGACCCACGCCGACGACCTGACCCTGGTCGCCACCGTCTCGCAGCTGTCCACCG 31220 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 961 GGGTGCCGACCCACGCCGACGACCTGACCCTAGTCGCCACCGTCTCGCAGCTGTCCACTG 1020 Query 31221 CGCTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAACGGCCGGCCGGGCCGTCGCG 31280 |||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||| Sbjct 1021 CGCTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAATGGGCGACCGGGTCGTCGCG 1080 Query 31281 ATATCCGCATCGAGCTATACGACGGCACGGTCTATCACCGCCGCATCCTCACCAGCACAG 31340 |||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 1081 ATATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGCCGCATTCTCACCAGCACCG 1140 Query 31341 AGCTGGACGCCGACACCGAGCGCTTGGCCATCGATGCCGCCCTGGGCCGGCTGGTCGAGC 31400 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 1141 AGCTGGACGCCGACACCGAGCGCTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGC 1200 Query 31401 CTGGTGACGTGGCGCGCATTTGTTTCATGGCGCTCTGTAGCGCCGCCACCGACGTGGTCG 31460 | || || |||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 1201 CGACCGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCAGCGACGTGGTCG 1260 Query 31461 AGATCGAGCACGTCACTGATAGCGAGGGCGTAGCAACTGCCGCCCTGACGTTCAAAGGGG 31520 |||| ||||||||||| |||||||||||||| ||||| ||||| ||||| |||||||||| Sbjct 1261 AGATTGAGCACGTCACCGATAGCGAGGGCGTCGCAACCGCCGCGCTGACATTCAAAGGGG 1320 Query 31521 TTCGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGG 31580 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 TTCGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGG 1380 Query 31581 CTGTACCAGTTCAGCCGTGGAGCCATCCGCTGGAGCTACAACAGCAGCGACCGGGACATC 31640 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1381 CTGTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATC 1440 Query 31641 A 31641 | Sbjct 1441 A 1441 Score = 1117 bits (1238), Expect = 0.0 Identities = 722/785 (92%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 34019 GACCGGACGCCTCGGGCGGTCACCGTGCGGCGTCTGATCGAGGCGCCATATCGCGAACTG 34078 |||||||||||||||||| |||| ||||| || ||||||||||| || |||||||||| Sbjct 2536 GACCGGACGCCTCGGGCGATCACTGTGCGCCGCCTGATCGAGGCACCCTATCGCGAACCT 2595 Query 34079 GCC---GGCGTGATCGATCC-GGCGAATCTCCAGCTCCTGGACGTGTCCGCCTCGTATCT 34134 ||| |||||||||||||| ||| ||||||||||||||||||||| ||| || | || Sbjct 2596 GCCCCGGGCGTGATCGATCCCGGCAAATCTCCAGCTCCTGGACGTGAGCGCGTCCTTACT 2655 Query 34135 TG-CCGCCTTGGCC-GAGGCGCCGACGAGCCTGTCGCAGAGCTACACCTTGACCGACCGC 34192 || |||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 2656 TGGCCGCGCTGGCCCGAGGCGCCGACCAGCCTGTCGCAGAGCTACACACTGACCGACCGC 2715 Query 34193 GTCGGCAGTTCTGGCGCGTTCGTTGATCGCGGAACCGGGGACTGGTGCCCGACCGGCCTA 34252 |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 2716 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGACTA 2775 Query 34253 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGCCCGAACGTCGTCACGTTGACGAACGCCACC 34312 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 2776 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGTCCGAACGTCGTCACGTTGACGAACGCCAGC 2835 Query 34313 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCTGTGGTGGACGACGAGATAGTCCGGGTG 34372 |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| Sbjct 2836 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCAGTCGTGGACGACGAGATAGTCCGGGTC 2895 Query 34373 GATGCCGTCAACTACGCCAGCGGTACCGTCACCCTGGCACGCGGCTGCGCCGATACCGTG 34432 ||||| ||||||||||||||||| || |||||||| || |||||||||||||||||||| Sbjct 2896 GATGCGGTCAACTACGCCAGCGGCACGGTCACCCTCGCGCGCGGCTGCGCCGATACCGTA 2955 Query 34433 CCGGCCAAGCACTTGGCCGGGGCTCGGGTCTGGTTCTATGACACGTTCGAAGCGGTGGAC 34492 ||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||| Sbjct 2956 CCGGCCAAGCATCTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCTGTGGAC 3015 Query 34493 GAGACGGTATACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACCAACACCAGCGAG 34552 || ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 3016 GAAACGGTCTACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACGAACACCAGCGAG 3075 Query 34553 GGCCAGCTCGCCCCGGCGCTGGCCGCCACCGACAGCCTCACTCTGACCGGGCGCCAGGGC 34612 ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 3076 GGCCAACTGGCCCCGGCGCTGGCCGCCACCGACAGCCTCACCCTGACCGGGCGCCAAGGT 3135 Query 34613 AAGCCGTATCCGCCCGGCCAGTTCCGAATCAACGGCAGCGCGTACCCGCCGAAGGTCTAC 34672 |||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| Sbjct 3136 AAGCCGTATCCGCCCGGCCAGTTCCGCATCAACGGCAGCGCGTACCCAACGAAAGTCTAC 3195 Query 34673 GGGGCGCTGTCGGTGAGCTGGGCGATGCGCGACCGCATCGGCCAGGCCGACCAGTTGATC 34732 ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| Sbjct 3196 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 3255 Query 34733 GATACCANGGTCGGCAACATCGGGCCCGAAGATGGGGCGACGGTGACGCTCCAGGTCTAC 34792 ||||||| ||||||||||||||| |||||||||||||||||||| ||||||| ||| ||| Sbjct 3256 GATACCACGGTCGGCAACATCGGACCCGAAGATGGGGCGACGGTTACGCTCCTGGT-TAC 3314 Query 34793 AGCGG 34797 ||||| Sbjct 3315 AGCGG 3319 >seq301 Length=948 Score = 829 bits (918), Expect = 0.0 Identities = 474/483 (98%), Gaps = 1/483 (0%) Strand=Plus/Plus Query 6882 CCGCAGACCCGCGNGCAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 6941 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3 CCGCAGACCCGCGAACAGGTCATCAGCGATATCAAGAACATCGGCGACCTCCAGCGCGAG 62 Query 6942 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 7001 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 63 CTGGCCCGTCTGGAAACCGCAATGAACGATGAAATCGGCCAGATCACCGAGCGCTATTCG 122 Query 7002 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 7061 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 123 GAGCCGGCCGAAGACCTGAAGAAGCGCCTGGCGGTCCTCCAGGGCGGAGTCCAGTCCTGG 182 Query 7062 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACG 7121 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 TGCGAGGCCAACCGTGCCGAGCTGACCGACAACAACAAGGTCAAGTACGCGAACCTCACA 242 Query 7122 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 7181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 243 ACCGGCGAGGTCCAGTGGCGCATCCGTCCCCCGTCCGTGACTGTGCGCGGCGCCGATGCG 302 Query 7182 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGCTCCAAGGAAGAGGTG 7241 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 303 GTCCTGGAGCTACTGCGCAGCAAGGGGCTAATCCGCTTCATCCGCACCAAGGAAGAGGTG 362 Query 7242 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTTCCGGGGCTGACCGTG 7301 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || Sbjct 363 AACAAGGAAGCGATCCTCAACGAACCCGAGGCCGTCCAGGGGCTGCCGGGGCTGACCCTG 422 Query 7302 AA-ACGGGCATCGAAGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 7360 || || |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 423 AACACCGGCATCGAGGACTTCGCCATCGTGCCTTTCGAAGCGGAGGTGCAGTGACATGGC 482 Query 7361 CGA 7363 ||| Sbjct 483 CGA 485 Score = 342 bits (378), Expect = 1e-89 Identities = 197/201 (98%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 7723 AGGAGGTGTGACATGGCCCGCAACCGCGCGCAACAGCTGTGCATCGTCACCTTGGACTAT 7782 |||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| Sbjct 749 AGGACGTGTGACATGGCACGCAACCGCGCGCAACAGCTGTGCATCG-CACCTTGGACTAT 807 Query 7783 CAGCGCTTCCTGTTACCCCAGGCTGATGCACTCAAGCTGATAGACATCATGAGTCGAGCC 7842 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 808 CAGCGCTTCCTGTTACCCCAGGCTGATGCACTCAAGCTGATAGACATCATGAGTCGAGCC 867 Query 7843 GCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTGGGTTCAAGTACACCGTCGGCGAAGTG 7902 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 868 GCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTGGATTCAAGTACACCGTCGGCGAAGTG 927 Query 7903 CCGGAAGTCGAGTTGACGATA 7923 ||||||||||||||||||||| Sbjct 928 CCGGAAGTCGAGTTGACGATA 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117752834598400