Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5122 214 3e-49 seq5123 104 3e-16 seq5124 89.7 7e-12 >seq5122 Length=22589142 Score = 214 bits (236), Expect = 3e-49 Identities = 369/523 (71%), Gaps = 21/523 (4%) Strand=Plus/Plus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCC--A 1455853 |||| || ||||| || ||||||| ||||||||| || | | | || || || | Sbjct 17925144 AGGCTGAAGCCTCTTTCTGGACCGTCGAGGAGGTGGATTT----GTC--CAAGGACCTTA 17925197 Query 1455854 CTGGGTGTCGC----TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909 ||| || | | ||| ||||||||||||||||||||| |||||| || || ||| Sbjct 17925198 CTGACTGGCACCGACTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGC-TTTC 17925256 Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969 ||||||||| |||||||||||| |||||| |||| | ||||| | | ||||| Sbjct 17925257 TTCGCCGCCTCCGATGGCATCGTAAACGAGAATCTGGTGGAGCGCTTCAGTCAGGAGGTG 17925316 Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029 || | | |||||||| | || ||||| |||||||||||||| || ||| | ||||| Sbjct 17925317 CAGGTCACGGAGGCACGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCG 17925376 Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089 || | ||| | ||||||||||| ||| || ||| ||| | || || |||| Sbjct 17925377 GAGATGTACAGTGTGCTGATCGACACTTACATCCGGGATCCGAACCAGCGCGAGTACCTG 17925436 Query 1456090 TTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGG 1456149 || ||| ||||| ||| ||||| | || | | ||||| |||||||| || ||| Sbjct 17925437 TTCAACGCTATCGAAACGATGCCGGCTGTAAAGCGCAAGGCAGACTGGGCCCTGTCCTGG 17925496 Query 1456150 ATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAG 1456207 ||| | | | || | || ||| | ||||| || ||| |||||||| ||| ||| Sbjct 17925497 ATCTCCTCCAA--GTCT-GCCAATTTCGGGGAGCGTATCATCGCCTTTGCCGCCGTGGAG 17925553 Query 1456208 GGCATCTTTTTCTCGGGCAGTTTCTGC-GCCATCTTTTGGCTCAAGAAGCGCGGCCTCAT 1456266 |||||||| ||| ||||| || ||| |||| || ||||| ||||||||||| || || Sbjct 17925554 GGCATCTTCTTCAGCGGCAGCTT-TGCATCCATTTTCTGGCTTAAGAAGCGCGGTCTAAT 17925612 Query 1456267 GCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||| || | | ||| |||||| ||||| ||||||||| Sbjct 17925613 GCCTGGAC-TGACCTTCTCCAACGAGCTTATCTCTCGCGACGA 17925654 >seq5123 Length=25762168 Score = 104 bits (114), Expect = 3e-16 Identities = 232/346 (67%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 || || || || || |||||| ||| | | ||| |||| | || || | ||||||| Sbjct 6844464 AATCGTAGCATTGCGCAACGGGACTGGATAGGCTCTATGATC-TTCTCGCTGGTGTTGCA 6844522 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 |||||||||||| ||||| || || | | | |||||||| || || ||||| || Sbjct 6844523 GGCCAGGGCAAAACGCGTTGTGCTGCTGTAGATCTCCATGGTTCGGCGCAGTGCCTGCTG 6844582 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 ||| || ||| | || ||| |||||||| || || | |||||||| | || |||| Sbjct 6844583 GGCACCCTCCGTCATGCTGTCAGCCTCGTCCAGAATCACAATCTTGTGCCTGCCCCGCGG 6844642 Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111 ||| ||| ||| | ||| ||||| | ||||| || || || | || || Sbjct 6844643 CAGTGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTGCGGACCACATCGATTCCACG 6844702 Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCG 333171 ||| | || || || || |||||||| ||||| | | | | |||| ||| | | Sbjct 6844703 CTCATTGGAGGCATTCAGCTCGAGCACAGCCTCCTTGTAGCTGTCTCCCAGGAGAATCCT 6844762 Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 ||||| ||| ||| | || ||||||||| || || |||||| Sbjct 6844763 AGCCAGACACTGTATGGTGGTTGTCTTGCCCACACCAGGAGGACCC 6844808 >seq5124 Length=26641161 Score = 89.7 bits (98), Expect = 7e-12 Identities = 179/262 (68%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||||||||| ||| ||| | ||| ||||||||| |||||||| || || || Sbjct 10934019 CGCCCACGCTGTTTGCTGCTGCCACAAACCGCCCGCAGCTGTCGTCGTGTTTCCTTCTGA 10933960 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 ||||| ||||| || ||||||||||| | | | | | |||||||||| | |||| Sbjct 10933959 CCATGACTGCCGACTCAATCGAGGGCATTTTTAAGTCTGTGGAGCAGTGCGCCATGATCT 10933900 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102 ||||| | || || ||||| || | || || | || || |||| ||| || Sbjct 10933899 CCAAGTCTGCTGGTGGCATTGGACTCAACGTGCATTGCATTCGTGCAAAGGGCACCT-CG 10933841 Query 260103 --TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGA 260160 | || ||||| ||||| |||||| || | || |||||||| | || || ||| | Sbjct 10933840 ATTTGC-GGCACAAACGGAACGTCCAATGGGTTGGTTCCCATGCTCAGGGTCTTCAACAA 10933782 Query 260161 CACGGCGCGCTACGTCGACCAG 260182 |||||| || || |||||| Sbjct 10933781 TGTGGCGCGTTATGTGGACCAG 10933760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177316980782088