Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5124 363 2e-95 seq5122 140 4e-28 >seq5124 Length=26641161 Score = 363 bits (402), Expect = 2e-95 Identities = 1201/1849 (65%), Gaps = 34/1849 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGA 68433 || |||||||||| | || || ||||| || ||||||||||| |||||||| ||| Sbjct 10932372 GTGAACTGAATGGCATTCGCAGCTGGCTTTGTGCGCAGATAGTACATTCCGGTTTTAAGA 10932431 Query 68434 CCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATA 68493 || |||| ||| || || || || ||||| ||| | || || || | | Sbjct 10932432 CCAGCTTTCCAGGAGTAAAAGTGTATGGAGGTCAGTTTTCCATAGTTGGGCTCTGCCACA 10932491 Query 68494 TGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATA 68553 ||||| || | ||| ||||| ||||| ||||| || || | || || |||||||| || Sbjct 10932492 TGAATGTTGAACGACTGACTCTGATCTATGAACGCACCACGGTCGGCGGCCATTTTAATC 10932551 Query 68554 ATACTCTTT--TGAGGAATTTCCCAAATAGTCTT--AAAAATCTGTTTGATATCATCTGG 68609 | ||| |||| |||||||| | ||||| | | ||| || | | ||||| Sbjct 10932552 GTGGACTTAACTGAG--ATTTCCCACACCGTCTTGTACAGATCGC---GA-ACCCTCTGG 10932605 Query 68610 ---AAGGC-TCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCA 68664 | ||| || | ||||| || || || | |||||| || ||||| || || Sbjct 10932606 GGGATGGCCTCAATGTTTTGGATTGAGCCCCTGCTGGATATGATCTGGTTCTTCATGTCG 10932665 Query 68665 TCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAAT 68724 || | |||||| | ||| |||| | | | | ||| | || || | ||||| Sbjct 10932666 TCGTCCCACAAGTCCAGCTCTGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGAAAC 10932725 Query 68725 TCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTA 68784 || || || | |||| | ||||| || || ||||||| || || | |||||||| Sbjct 10932726 TCGCCGGACAGAACTCGCCTGGTGTATATGTTCGTGGTATAGGGCTCGAAGGATTCATTG 10932785 Query 68785 TTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTA 68844 || |||| |||||||| || |||||||| ||||| || || |||| | || | Sbjct 10932786 TTGCCCATTATTTGAGCTGTAGATGCAGTGGGCATTGGAGCAACCAGCAGGGAGTTGCGG 10932845 Query 68845 AGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACA 68904 | ||| || | |||| || || || | | ||| |||||||| | | ||| || Sbjct 10932846 ACACCGTGCTTCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTCGTTGGGACC 10932905 Query 68905 ACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCA 68964 | ||| | ||||| || | |||||| || || | || | ||| ||||| Sbjct 10932906 TTGTCCCACATGTCGTACTGCAAAATTCCCTTGCTCACCGGGCTGCCCTCATAGGTTTCG 10932965 Query 68965 TAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTT 69024 ||||| ||||| | || |||||||| || || || || || || || ||||| ||| Sbjct 10932966 TAAGGGCCTTCGGTCTGGGCCAGTTCACAGCTGGCTTCCAAGGCTCCATAGTAAATGGTT 10933025 Query 69025 TCGAAAATCTTCTTATTGA---GATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAA 69081 ||||| |||| || ||| | || | |||||| ||| || | || | | | Sbjct 10933026 TCGAATATCTGCTGATTCAACAGACCG---GCTTCTTCACTTTCATACGGGAATCGCATG 10933082 Query 69082 AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTT 69141 ||||| || || || || |||||||||| || || || | || | || ||| |||| Sbjct 10933083 AGAATCAAGGCGTCAGCGAATCCCTGAATACCTATGCCCACGGGACGGTGCCTCAAATTT 10933142 Query 69142 GAACTTTCA-GCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCG 69200 || ||| | || ||||| | |||||||| || ||||| || || || || ||||||| Sbjct 10933143 GA-CTTCCTTGCCTCTGGCAAGGGATAATAGTTGATATCAATTATCTTGTTTAGATTTCT 10933201 Query 69201 GACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA--TCGTC-CATCTATAAC 69257 | |||| || || ||||| || || |||||| | || || | | | || Sbjct 10933202 GGTAACTATCTTGGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTTCTCCGGTGTGAC 10933261 Query 69258 AAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATA 69317 |||||| || || || | ||||| | || || || |||| ||||| | | || Sbjct 10933262 AAACATGTTGAGGGCAATGGATGCCAAGTTGCAGACAGCTATCTCATCCGGCGCGGAGTA 10933321 Query 69318 TTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACT 69377 || | || || || || | || || || ||||| || || | ||| ||||| || || Sbjct 10933322 TTCAACGATTTCCGTGCACAAGTTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCT 10933381 Query 69378 CTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTC 69437 ||| |||| || ||||||||| | || || ||||| | |||||||| | || | || Sbjct 10933382 CTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCAGTTTCCACTTGCGCCTC 10933441 Query 69438 GATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTC--TTGTAACGCTTCTCTTTT 69495 || || | | ||| | | ||| || | || || ||| || ||||| Sbjct 10933442 AATGATGGCATACCACAGGGATTGAGCCTTAAC--CGTTCGGTTGGCTCGACCCTCTTGC 10933499 Query 69496 TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACAT 69555 || |||| ||| ||| |||||||||||| ||||| ||||| | | ||||| ||| Sbjct 10933500 TCGTATTTCTCATACAGCTTTTCGAATTCATCGCCCCACACATCTTGGAGGCCAGGGCAT 10933559 Query 69556 TCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCG 69615 | | || ||||| | ||||| || | | ||| || || ||||| || |||||| Sbjct 10933560 TTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGCTTCATGAAGAGATCG 10933619 Query 69616 GGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAtttttt 69675 || ||||| ||||| ||| ||||| | || | ||| ||||| || || || ||||| Sbjct 10933620 GGTATCCACAGAGCGTAAAACAGATCGCGGGCGCGATTCTCTTCCTTGCCCGTGTTTTTC 10933679 Query 69676 ttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACT 69735 || || ||||| ||||| | | ||| || ||||| || || || || || || | | | Sbjct 10933680 TTTAGTTCGAGGAACTCAAAGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCA 10933739 Query 69736 CCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGC 69795 || || || || |||||||| || | || | || || || |||| || ||| Sbjct 10933740 CCGGGACGCTTGCCGCCTCCCTGGTCCACATAACGCGCCACATTGTTGAAGACCCTGAGC 10933799 Query 69796 ATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGA 69855 || |||| | ||||| || | || ||||| || |||| | | || |||| ||| Sbjct 10933800 ATGGGAACCAACCCATTGGACGTTCCGTTTGTGCCGCAAATCGAGGTGCCCTTTGCACGA 10933859 Query 69856 AT--ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTT 69913 || | | | | | || || || || || || || ||||| | || || | | Sbjct 10933860 ATGCAATGCACGTTG--AGTCCAATGCCACCAGCAGACTTGGAGATCATGGCGCACTGCT 10933917 Query 69914 TCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAG 69973 || | | | | || ||||| || || | ||||| | ||||| ||||| | Sbjct 10933918 CCACAGACTTAAAAATGCCCTCGATTGAGTCGGCAGTCATGGTCAGAAGGAAACACGACG 10933977 Query 69974 ACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATT 70033 ||| || | | | || | ||| ||| | || || ||||| || || || | Sbjct 10933978 ACAGCTGCGGGCGGTTTGTGGCAGCAGCAAACAGCGTGGGCGATGCATGCGTAAAGTAGC 10934037 Query 70034 TTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTA 70093 || || || |||||||| ||||| | || | ||||||||| ||| ||||| | Sbjct 10934038 GCTCCGATAGAAGATTGTAGGTTTCCACGGCCGCATCTATATCCTCTCCATGGATTCCGA 10934097 Query 70094 TCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACA 70153 |||| || ||||||| ||||||||| ||||| ||| | | || ||| | || | | Sbjct 10934098 TCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGTTTGTCTTGAGGA 10934157 Query 70154 GGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTC 70202 | || || |||||||| ||||| ||||||||||| || |||||| Sbjct 10934158 GATAGGAACGCTCCAGAGTCTTAAAGCCAAAATAGTTATAGCCAAAGTC 10934206 >seq5122 Length=22589142 Score = 140 bits (154), Expect = 4e-28 Identities = 457/703 (65%), Gaps = 9/703 (1%) Strand=Plus/Minus Query 39347 TTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTA 39406 ||||| ||||| || || || || |||| || || | |||||||| | || || || Sbjct 17925948 TTCTCAAAAAAGTTGGTCTTTCCATCCAGCGAGATCATCTCCATGAAGTTGAAGGGGTTC 17925889 Query 39407 GTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCT 39466 | | || || | || || || || || || ||| | || ||||| || ||| Sbjct 17925888 TTGGTGTTGTAGATCTTCCCAACGCCCAACTCCACAAGCAAACGGTCCGCAACGAACTCT 17925829 Query 39467 ATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTT 39526 ||||| ||||| ||||||||||| || || | ||||| || || || || || Sbjct 17925828 ATGTACTGGGACATCAGGTCACAATTCATGCCGATTAAATTAACGGGCAGGGCATCGGTG 17925769 Query 39527 AGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC--GATGTTACTACCTCATCAC 39584 || ||||| | || || | || || || || ||| |||| | | ||| | Sbjct 17925768 AGGAACTCCTGCTCAATCGCCACCGCGTCACGGATGATCTCGATGATGCG--CTCGTGCT 17925711 Query 39585 TCGGTGGATGCAATAAATGTTTAAACATTAAGCA-GGCGAAGTCACAATGTAGGCCCTCA 39643 | ||| | |||| | || | ||||| | ||| ||| ||||| || || | |||||| Sbjct 17925710 TGGGTCGCTGCACCAGGTGCTGGAACATCA-GCACGGCAAAGTCGCAGTGCAAGCCCTCG 17925652 Query 39644 TCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGC 39703 || | | || | ||||| || || || ||||||||||||||||| ||||| || ||| Sbjct 17925651 TCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGTCCAGGCATTAGACCGCGCTTCTTAAGC 17925592 Query 39704 CAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACA 39763 || || |||| ||||| || ||||||||||| || || || ||||| || | Sbjct 17925591 CAGAAAATGGATGCAAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAAGGCGATG 17925532 Query 39764 AGTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCACTTCTGTGCCCAATCAGCTTTC 39820 | | ||| ||| || | | | || | | ||||| | | ||||| || || || Sbjct 17925531 ATACGCTCCCCGAAATTGGCAGACTTGGAGGAGATCCAGGACAGGGCCCAGTCTGCCTTG 17925472 Query 39821 TTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTTTTCATCACTATCT 39880 ||||||| ||||| ||||| ||||| || || || || | | | ||| Sbjct 17925471 CGCTTTACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCGCGCTGGTTCGGATCC 17925412 Query 39881 TTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATC 39940 | || || || || | || ||| ||||| || || || | ||| || || || ||| Sbjct 17925411 CGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATC 17925352 Query 39941 TGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCC 40000 || || ||||| || || | ||| || || | || ||||| || || | ||| || Sbjct 17925351 TGGAAGCCGTAGAAGCAGCGTGCCTCCGTGACCTGCACCTCCTGACTGAAGCGCTCCACC 17925292 Query 40001 AAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | ||| || || || || ||||| ||||| || || |||| Sbjct 17925291 AGATTCTCGTTTACGATGCCATCGGAGGCGGCGAAGAAAGCCA 17925249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686864803491360