Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_027298.1 Length=36814 Score E Sequences producing significant alignments: (Bits) Value seq3473 2352 0.0 seq301 320 4e-83 >seq3473 Length=3319 Score = 2352 bits (2608), Expect = 0.0 Identities = 1385/1439 (96%), Gaps = 0/1439 (0%) Strand=Plus/Plus Query 30181 GGCCAGGCGTCGCCGCCGCTGGGTTTTGCTGCCCTGGAGGAACGCACCTGGACGGTCAGC 30240 ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| Sbjct 3 GGCCAGGCGTCGCCGCCGCTGGGTTTTGCCGCCCTGGAGGAACGCACTTGGACCGTCAGC 62 Query 30241 ATCGGCACCGACGGCCCGCCCGTGGTCAATGCACGGATCGTCTGGAGGCTCCTGGGCGAG 30300 || ||||| |||||||||||||| |||||||| ||||||||||||| ||||| ||||||| Sbjct 63 ATTGGCACGGACGGCCCGCCCGTCGTCAATGCGCGGATCGTCTGGACGCTCCAGGGCGAG 122 Query 30301 CCGGACCTGGTCCTGGTCATCACCGGCAATCGGATCATCGCCTGGACGTTCGCCCCGGAC 30360 |||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 123 CCGGACCTGGTCCTGGTCATCACCGGCAATCGCATCATCGCCTGGACCTTCGCGCCGGAC 182 Query 30361 TGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAATCA 30420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 TGGGGCGACAGCATCGTCGAGCGCCTGAGCGCCTCGACAAATATCCTGCAAAGCGAATCA 242 Query 30421 GCCGTGACCCAGCGCCGGGCTATGCGCCTGGCACCGCGCCGGGAGTTCGAAGCGAACATG 30480 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 243 GCCGTGACCCAGCGCCGGGCTATGCGCCTGGCGCCGCGCCGGGAGTTCGAAGCGAACATG 302 Query 30481 TACGCGGTGGACCGCGAGCGGCAGCTGCTGGACATGACGCTGTTCGGCTGGGGCGCGCGC 30540 |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 303 TACGCGGTAGACCGCGAGCGGCAGCTCCTGGACATGACGCTGTTTGGCTGGGGCGCGCGA 362 Query 30541 ATTTGGGCACTGCCGATCTGGCCTGATATCCAGCTGCTCCAGGAACCGCTGGCGGCCGGC 30600 |||||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||| Sbjct 363 ATTTGGGCGCTGCCGATTTGGCCTGATATCCAACTGCTCCAAGAACCGCTGGCGGCCGGC 422 Query 30601 TCGCTGAACATTCCGTGCGACACGGCCGGCCTCGACTTCCGCGACGGCGGTCTGGCGATG 30660 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 423 TCGCTGAACATTCCGTGCGACACGGTCGGCCTCGACTTCCGCGACGGCGGTCTGGCGATG 482 Query 30661 CTGCGCGGCGAGGACGCCTTCACCTATGAAGTCGTCGAGGTCAAGGCAGTGACCGCCGCC 30720 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 483 CTGCGCGGCGAGGACGCCTTCACCTATGAAGTCGTCGAGGTCAAGGCAGTGACCGCCGCC 542 Query 30721 GGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGAGAACTGGCTCGCGACTGTACCCG 30780 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 543 GGCCTGGACCTGGTCCGCCCCGTCCAGGCCACCTGGGTAACTGGCTCGCGACTGTACCCG 602 Query 30781 GTGCGCACCGCGCAGTTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGCAG 30840 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 GTGCGCACCGCGCAGCTGACCGAACAGCCCACGCTGACCCGGCTGACCGATACCGCGCAG 662 Query 30841 TCTGCGCGGGTGTCGTTCCTGATAATGGAGCCCAGCGCCTGGCCCGAGGTAATGCCGGCG 30900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 663 TCTGCGCGGGTGTCGTTCCTGATAATGGAGCCCAGCGCCTGGCCCGAGGTAATGCCGGCG 722 Query 30901 ACGACCTACAGGGGGCGGCCAGTGCTGGAGCAGCACCCGGACGAAAGCGAAGACCTGACG 30960 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || Sbjct 723 ACGACCTACAGGGGGCGGCCAGTGCTGGAGCAGCGCCCGGACGAAAGCGAAGACCTCACC 782 Query 30961 TCGAGCTATCAGCGCCTGCTGTCCACCTTGGAAAACGGCAGCGCGATTCCCCGCGTGACC 31020 || |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 783 TCCAGCTATCAGCGCCTGCTGTCCACCCTGGACAACGGCAGCGCGATTCCCCGCGTGACC 842 Query 31021 GACGTCGCCGGGATGGCGCTGCCGGTCATCGGCCATCGCTGGATCGGCATGGGCCGAGCC 31080 ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| Sbjct 843 GACGTCGCCGGGATGGCGCTGCCCGTCATCGGTCATCGCTGGATCGGCATGGGCCGAGCC 902 Query 31081 GAGCGGTCGGCGTTCCGTAGCCTGGTCTATGCGCTGCGCGGCCAGCAGAAGCCGCTATGG 31140 ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 903 GAGCGGTCGGCGTTCCGCAGCCTGGTCTATGCGCTGCGAGGCCAGCAGAAGCCGCTATGG 962 Query 31141 GTGCCGACCCACGCCGACGACCTGACCCTGGTCGCCACCGTCTCGCAACTGGCGACCGCG 31200 ||||||||||||||||||||||||||||| ||||||||||||||||| ||| | || ||| Sbjct 963 GTGCCGACCCACGCCGACGACCTGACCCTAGTCGCCACCGTCTCGCAGCTGTCCACTGCG 1022 Query 31201 CTGGATGTGCGCAATATCGGCTATGCCCGTTTCGCGAATGGTCGGCCGGGCCGTCGCGAC 31260 ||||| ||||||||||||||||||||||||||||| ||||| || ||||| |||||||| Sbjct 1023 CTGGACGTGCGCAATATCGGCTATGCCCGTTTCGCCAATGGGCGACCGGGTCGTCGCGAT 1082 Query 31261 ATCCGTATCGAGCTGTACGACGGCACGGTCTATCACCGCCGCATCCTCACCAGCACCGAG 31320 ||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 1083 ATCCGCATCGAGCTGTACGACGGCACCGTCTATCACCGCCGCATTCTCACCAGCACCGAG 1142 Query 31321 CTGGACGCCGACACCGAGCGTTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGCCG 31380 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1143 CTGGACGCCGACACCGAGCGCTTGGCCATCGACGCCGCCCTGGGCCGCCTGGTCGAGCCG 1202 Query 31381 ACCGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCACCGACGTGGTCGAG 31440 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1203 ACCGATGTAGCGCGCATCTGTTTCATGGCGCTCTGTAGCGCCGCCAGCGACGTGGTCGAG 1262 Query 31441 ATAGAGCACGTCACCGATAGCGAGGGCGTCGCAACCGCCGCGCTGACGTTCAAAGGGGTT 31500 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1263 ATTGAGCACGTCACCGATAGCGAGGGCGTCGCAACCGCCGCGCTGACATTCAAAGGGGTT 1322 Query 31501 CGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGGCT 31560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1323 CGTGACGATGAGTTTTAACAGCCGCGAAAGCTCGCTCGCGGATGGGCAGCCGGTGCGGCT 1382 Query 31561 GTACCAGTTCAGCCGTGGAGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATCA 31619 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1383 GTACCAGTTCAGCCGTGGCGCGATCCGCTGGAGCTACAACAGCAGCGACCGGGACATCA 1441 Score = 1121 bits (1242), Expect = 0.0 Identities = 723/785 (92%), Gaps = 7/785 (1%) Strand=Plus/Plus Query 33997 GACCGGACGCCTCGGGCGATCACTGTGCGCCGACTGATCGAGGCGCCATATCGCGAACTG 34056 |||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| Sbjct 2536 GACCGGACGCCTCGGGCGATCACTGTGCGCCGCCTGATCGAGGCACCCTATCGCGAACCT 2595 Query 34057 GCC---GGCGTGATCGATCC-GGCGAATCTCCAGCTCCTGGACGTGTCCGCATCCT-ACC 34111 ||| |||||||||||||| ||| ||||||||||||||||||||| ||| |||| || Sbjct 2596 GCCCCGGGCGTGATCGATCCCGGCAAATCTCCAGCTCCTGGACGTGAGCGCGTCCTTACT 2655 Query 34112 TCGCTGCGCTGGCC-GAGGCGCCGACAAGCTTGTCGCAGAGCTACACCTTGACCGACCGC 34170 | || ||||||||| ||||||||||| ||| |||||||||||||||| ||||||||||| Sbjct 2656 TGGCCGCGCTGGCCCGAGGCGCCGACCAGCCTGTCGCAGAGCTACACACTGACCGACCGC 2715 Query 34171 GTCGGCAGTTCTGGCGCGTTCGTGGATCGCGGAACCGGCGACTGGTGCCCGACCGGGCTA 34230 |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 2716 GTCGGCAGCTCTGGCGCGTTCGTTGATCGCGGAACCGGCGACTGGTGCCCGACCGGACTA 2775 Query 34231 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGGCCGAACGAGGTCACGCTGACCAACGCCACC 34290 ||||||||||||||||||||||||||||| ||||||| |||||| |||| ||||||| | Sbjct 2776 CTCGCCGCCGAGCTGCCGCTGGCGGCCGGTCCGAACGTCGTCACGTTGACGAACGCCAGC 2835 Query 34291 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCTGTGGTGGACGACGAGATAGTCCGGGTC 34350 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 2836 CGGCTGGAGGACGTCACTGTCGGCCAGGCCGCAGTCGTGGACGACGAGATAGTCCGGGTC 2895 Query 34351 GATGCGGTCAACTATGCCAGTGGCACCGTCACCCTGGCGCGCGGCTGCGCCGATACCGTT 34410 |||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||| Sbjct 2896 GATGCGGTCAACTACGCCAGCGGCACGGTCACCCTCGCGCGCGGCTGCGCCGATACCGTA 2955 Query 34411 CCGGCCAAGCACTTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCGGTGGAC 34470 ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 2956 CCGGCCAAGCATCTGGCCGGGGCTCGGGTCTGGTTCTACGACACGTTCGAAGCTGTGGAC 3015 Query 34471 GAGACGGTCTACAGCCAGGGCGTGACGCTTCAGGCCCGGCTGCTGACCAACACCAGCGAG 34530 || |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 3016 GAAACGGTCTACAGCCAGGGCGTGACGCTCCAGGCCCGGCTGCTGACGAACACCAGCGAG 3075 Query 34531 GGCCAGTTGGCCCCGGCGCTGGCCGCTACCGACAGCCTGACGCTGACCGGGCGCCAAGGT 34590 ||||| ||||||||||||||||||| ||||||||||| || |||||||||||||||||| Sbjct 3076 GGCCAACTGGCCCCGGCGCTGGCCGCCACCGACAGCCTCACCCTGACCGGGCGCCAAGGT 3135 Query 34591 AAGCCATACCCGCCAGGCCAGTTTCGCATCAACGGCAGCGCGTACCCGGCCAAGGTCTAC 34650 ||||| || ||||| |||||||| ||||||||||||||||||||||| | || |||||| Sbjct 3136 AAGCCGTATCCGCCCGGCCAGTTCCGCATCAACGGCAGCGCGTACCCAACGAAAGTCTAC 3195 Query 34651 GGGGCGCCGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 34710 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3196 GGGGCGCTGTCGGTGAGCTGGGCGAAGCGCGACCGGATCGGCCAGGCCGACCAGTTGATC 3255 Query 34711 GATACCACGGTCGGCAACATCGGGCCCGAAGATGGGGCGACGGTGACGCTCCAGGTCTAC 34770 ||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||| ||| Sbjct 3256 GATACCACGGTCGGCAACATCGGACCCGAAGATGGGGCGACGGTTACGCTCCTGGT-TAC 3314 Query 34771 AGCGG 34775 ||||| Sbjct 3315 AGCGG 3319 >seq301 Length=948 Score = 320 bits (354), Expect = 4e-83 Identities = 196/207 (95%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 7176 ATATGGCGGGGGTGTGATATGGCCCGCAACCGCGCGCAACAGCTGTGCATCGTCACCTTG 7235 || ||| || |||||| ||||| |||||||||||||||||||||||||||| ||||||| Sbjct 743 ATGTGGAGGACGTGTGACATGGCACGCAACCGCGCGCAACAGCTGTGCATCG-CACCTTG 801 Query 7236 GACTATCAGCGTTTCCTGTTACCCCAGGCTGATGCACTCAAGCTGATAGACATCATGAGT 7295 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 802 GACTATCAGCGCTTCCTGTTACCCCAGGCTGATGCACTCAAGCTGATAGACATCATGAGT 861 Query 7296 CGAGCCGCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTGGGTTCAAGTACACCGTCGGC 7355 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 862 CGAGCCGCAGAGGTTCAGGCCGACTACGCCTCTGGAGCTGGATTCAAGTACACCGTCGGC 921 Query 7356 GAAGCGCCGGAAGTCGAGTTGACGGTA 7382 |||| ||||||||||||||||||| || Sbjct 922 GAAGTGCCGGAAGTCGAGTTGACGATA 948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117676039271488