Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5120 122 7e-23 seq5122 109 4e-19 seq5121 100 2e-16 >seq5120 Length=17746568 Score = 122 bits (134), Expect = 7e-23 Identities = 337/509 (66%), Gaps = 12/509 (2%) Strand=Plus/Plus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| ||||| || ||||| | ||| | | || || || ||| |||| |||| ||| Sbjct 11969906 CCCAAGATTGTGAACGGTCCGCAGATCCTGGACAAGTACGTCGGTGAATCAGAAGCCAAT 11969965 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | || ||||||||||| || || || ||||| |||| ||||| || | || ||| Sbjct 11969966 ATCCGGCGTTTGTTTGCCGAGGCAGAGGAAGAGGAAAAGCGTTTGGGACCGAACAGTGGA 11970025 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGG-- 19604 ||||||| || || | || || | ||||| || || ||| | || || ||| Sbjct 11970026 CTGCACATCATCATCTTCGACGAGATCGACGCCATTTGCAAGGCTCGTGGATCCGTGGCC 11970085 Query 19605 TGTA--AATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 ||| | ||| || || ||||| || || |||||||| ||| | ||| | ||||| || Sbjct 11970086 GGTAATAGTGGTGTCCACGACACGGTCGTGAATCAACTGCTGGCCAAAATCGACGGCGTA 11970145 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||| || || | || || || ||||| || || | ||| | || || Sbjct 11970146 GAGCAGTTGAACAACATCCTGGTGATAGGAATGACCAACAGGCGGGACATGATCGATGAG 11970205 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 ||| | | ||||| || || |||||| | | || || || | ||| ||| | || Sbjct 11970206 GCCCTGCTGCGACCTGGCCGTTTGGAAGTTCAAATGGAGATAAGCTTGCCCAACGAGCAG 11970265 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840 ||||| || | || | ||||| | ||| ||| | ||||| | ||| || Sbjct 11970266 GGACGCGTCCAGATCCTCAACATCC--ACACCAAGCGGATGCGGGACTTCAACAAGATAG 11970323 Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899 | |||||| || | | || |||||||| || || || |||| || |||||||| Sbjct 11970324 CTAGCGATGTGGA-CAACAACGAAATTGCGGCCAAGACAAAGAACTTCAGTGGCGCAGAG 11970382 Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATC 19928 | |||||| | || || || |||||||| Sbjct 11970383 TTGGAGGGACTGGTTAGAGCGGCCCAATC 11970411 >seq5122 Length=22589142 Score = 109 bits (120), Expect = 4e-19 Identities = 237/353 (67%), Gaps = 9/353 (3%) Strand=Plus/Plus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 || ||||| || || || || || || || ||||| || || | || ||||| |||||| Sbjct 17925326 GAGGCACGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTAC 17925385 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGA---AGCATCGATTGTTTAAT 44047 ||| | ||||| || || |||||| ||| | || || || | | |||| || Sbjct 17925386 AGTGTGCTGATCGACACTTACATCCGGGATCCGAACCAGCGCGAGTACC---TGTTCAAC 17925442 Query 44048 GCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAAT 44107 || || ||||| | || || | || | || |||||||||||||| ||||| Sbjct 17925443 GCTATCGAAACGATGCCGGCTGTAAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCTCC 17925502 Query 44108 TCAAA---TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTC 44164 || || || ||| || || || | |||| ||||| | ||||| ||||| ||| Sbjct 17925503 TCCAAGTCTGCCAATTTCGGGGAGCGTATCATCGCCTTTGCCGCCGTGGAGGGCATCTTC 17925562 Query 44165 TTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTG 44224 || || ||||| |||| || ||| | ||||| || ||| | |||||||| || Sbjct 17925563 TTCAGCGGCAGCTTTGCATCCATTTTCTGGCTTAAGAAGCGCGGTCTAATGCCTGGACTG 17925622 Query 44225 ACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 || || || || ||| | || ||| || || ||||| || ||||| ||||| Sbjct 17925623 ACCTTCTCCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGC 17925675 >seq5121 Length=18748788 Score = 100 bits (110), Expect = 2e-16 Identities = 338/519 (65%), Gaps = 12/519 (2%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 || || || || || ||||| | ||| | | || || || || ||||||| | ||| Sbjct 13719814 CCGAAGATCGTCAACGGTCCGCAGATCCTTGACAAGTACGTGGGCGAATCGGAGGCCAAT 13719755 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 ||||| || |||| || || || || || || | || || | || | ||| ||| Sbjct 13719754 GTACGGCGGCTGTTCGCCGAAGCGGAGGAGGAGGAGAAGCGCCTGGGTCCCAACAGTGGA 13719695 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGGT- 19605 | || || || || | || || | || || || || ||||| | || || ||| Sbjct 13719694 CTACATATCATTATCTTCGACGAGATCGATGCCATTTGCAAGCAGCGTGGCTCCGTGGCC 13719635 Query 19606 -GTAAA--TGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | || ||| || || ||||| || ||||||||| | || | ||| | || || ||| Sbjct 13719634 GGCAATAGTGGTGTCCACGACACCGTCGTCAATCAATTGCTAACCAAAATCGATGGCGTT 13719575 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||||||| ||| | |||||||||||||| ||| | ||| | || ||| Sbjct 13719574 GATCAGCTGAATAACATTCTCGTTATTGGCATGACCAATCGCAGGGACATGATCGACGAG 13719515 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 ||||| | ||||||||||| | || | | || || || | | | ||| | || Sbjct 13719514 GCCTTGCTGCGACCCGGTCGCCTCGAGGTCCAAATGGAGATCAGCCTGCCCAACGAGCAG 13719455 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840 || || || | || | || || | ||| ||| | ||||| | ||| | | Sbjct 13719454 GGTCGCGTCCAGATCCTCAATATCC--ACACCAAGCGAATGCGCGATTTCAACAAGATTA 13719397 Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899 | |||||||| || | | || || ||||| ||| ||||| || | ||||| || || Sbjct 13719396 ACGACGATGTGGA-CAACAAGGAGATTGCCGCGCTCACCAAGAATTTCAGCGGAGCCGAG 13719338 Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 || ||||| || || | |||||||| || | ||| ||| Sbjct 13719337 CTGGAGGGCTTGGTCCGTGCCGCCCAGTCGAGTGCCATG 13719299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397431179369620