Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5124 181 1e-40 seq5122 107 2e-18 >seq5124 Length=26641161 Score = 181 bits (200), Expect = 1e-40 Identities = 633/983 (64%), Gaps = 9/983 (1%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || || || || || || ||||| ||| | |||||||| |||| ||||| ||||| || Sbjct 10932750 TATATGTTCGTGGTATAGGGCTCGAAGGATTCATTGTTGCCCATTATTTGAGCTGTAGAT 10932809 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || || | || ||| ||| |||| ||| | | | | ||| ||| Sbjct 10932810 GCAGTGGGCATTGGAGCAACCAGCAGGGAGTTGCGGACACCGTGCTTCTTGATGGACTCC 10932869 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361 || || | |||||| | | | ||| || | |||||| || |||| | Sbjct 10932870 TTCAGTTTCTGCCAGTCCCAAAGGTTCGTTGGGACCTTGTCCCACATGTCGTACTGCAAA 10932929 Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421 || || | | | | || |||||| | || || || ||||| || || |||| | Sbjct 10932930 ATTCCCTTGCTCACCGGGCTGCCCTCATAGGTTTCGTAAGGGCCTTCGGTCTGGGCCAGT 10932989 Query 118422 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCC 118481 || |||| || || | |||| | | || || ||||| || || | ||||| Sbjct 10932990 TCACAGCTGGCTTCCAAGGCTCCATAGTAAATGGTTTCGAATATCTGCTGATTCAACAGA 10933049 Query 118482 TTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGG 118541 ||| || || ||| ||| || ||| | ||| || | || |||| || || Sbjct 10933050 CCGGCTTCTTCACTTTCATACGGGAATCGCATGAGAATCAAGGCGTCAGCGAATCCCTGA 10933109 Query 118542 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC-CACGGGATA 118600 | ||| | ||| | || || || |||| ||| ||||||| || ||| || |||||| Sbjct 10933110 ATACCTATGCCCACGGGACGGTGCCTCAAATTTGACTTCCTTGCC-TCTGGCAAGGGATA 10933168 Query 118601 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 118660 | | || |||| || | | | ||||||||| |||| || | ||| |||| ||| | || Sbjct 10933169 ATAGTTGATATCAATTATCTTGTTTAGATTTCTGGTAACTATCTTGGTGACTTCCTTGAG 10933228 Query 118661 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 118720 ||| | | ||||| | | |||| ||||| || | ||||| || || || Sbjct 10933229 CTTCTTGAAATCATACGTCT---TCTCCGGTGTGACAAACATGTTGAGGGCAATGGATGC 10933285 Query 118721 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTT 118780 || || || |||| |||||||| | | ||| || | ||||||||||||||||| Sbjct 10933286 CAAGTTGCAGACAGCTATCTCATCCGGCGCGGAGTATTCAACGATTTCCGTGCACAAGTT 10933345 Query 118781 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 118840 | ||| |||||||| | |||| || || ||| |||| || || |||||| | Sbjct 10933346 GCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAA 10933405 Query 118841 AAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC--CAGACATCG 118898 |||||||| || | || || ||| ||| | || | || || | | ||| || | Sbjct 10933406 GAGCATGTACGGATTTCCAGTTTCCACTTGCGCCTCAATGATGGCATACCACAGGGATTG 10933465 Query 118899 GCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCA 118958 ||| || || ||||||||| ||||||| |||||| || || || ||| Sbjct 10933466 --AGCCTTAACCGTTCGGTTGGCTCGACCCTCTTGCTCGTATTTCTCATACAGCTTTTCG 10933523 Query 118959 AACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCAT 119018 || || || ||| | ||| ||| || || || | ||||| | ||| ||||| Sbjct 10933524 AATTCATCGCCCCACACATCTTGGAGGCCAGGGCATTTGTGGGGGCACATGAGCGACCAA 10933583 Query 119019 TGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGA 119078 | ||| |||| || |||||||||||||| || || ||||| || || | || ||| Sbjct 10933584 TCACCGTTGGCCTCCACGCGCTTCATGAAGAGATCGGGTATCCACAGAGCGTAAAACAGA 10933643 Query 119079 TCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATA 119138 || || |||| ||||| | ||| || | || | || || | || | Sbjct 10933644 TCGCGGGCGCGATTCTCTTCCTTGCCCGTGTTTTTCTTTAGTTCGAGGAACTCAAAGACA 10933703 Query 119139 TCCGCGTGCCACGGTTCCAGGTA 119161 |||| |||||| || |||||||| Sbjct 10933704 TCCGAGTGCCAGGGCTCCAGGTA 10933726 >seq5122 Length=22589142 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 179065 TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATTG 179124 ||||| || ||| | | || || ||||||||||| | ||||||||| |||||||| ||| Sbjct 4847008 TCTTTACCTCCCGTCAAGCGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTGATGTTG 4846949 Query 179125 TTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCACC 179183 || | ||||| | | | ||||| || || || || ||| || ||||| || || || Sbjct 4846948 TTGGCACCCACAAAATTCTGGGCCAGATTCACGATTGTCATCTGC-AGGGATACCTCTCC 4846890 Query 179184 GTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCATCTCATC 179243 ||| ||||| |||||| | || ||||| || | | | ||| || ||||||| |||| Sbjct 4846889 GTGGTGGTAGGCCGACATCTCTGCCACCGATCCGGATAGCTGGGCTACCTTCACCTCACG 4846830 Query 179244 CTTGAGGTTCTTGTGGAAGCACGCATACATCACCTT 179279 |||| ||| | | ||||| | ||||||| || Sbjct 4846829 CTTGTCGTTTCTCTTAAAGCAAGTGAACATCACTTT 4846794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618395589225440