Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5124 185 1e-41 seq5122 100 3e-16 >seq5124 Length=26641161 Score = 185 bits (204), Expect = 1e-41 Identities = 882/1383 (64%), Gaps = 28/1383 (2%) Strand=Plus/Minus Query 104618 TATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGT 104677 || || ||||| |||||| ||||| || | |||||||| || | ||| || Sbjct 10933726 TACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTCCTCGAACTAAAGAAAAACACGGGC 10933667 Query 104678 GACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATG 104737 | || ||| || ||||||||| || | |||||| ||||| || |||||||||||| Sbjct 10933666 AAGGAAGAGAATCGCGCCCGCGATCTGTTTTACGCTCTGTGGATACCCGATCTCTTCATG 10933607 Query 104738 AAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTC 104797 ||| | || |||| | || ||||||| ||| | || || |||| ||||| ||| Sbjct 10933606 AAGCGCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAATGCCCTGGCCTC 10933547 Query 104798 TCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGG 104857 |||| ||| || || || ||| || || || |||||| |||| ||||| Sbjct 10933546 CAAGATGTGTGGGGCGATGAATTCGAAAAGCTGTATGAGAAATACGAGCAAGAGGGTCGA 10933487 Query 104858 GCGACTGCGACGGTGCCAGCTGCCGAT--GTGTGGAAAGCTATTCTCAAGTCTCAAACCG 104915 || | ||||| ||| | || ||||| | || || | || | ||| | Sbjct 10933486 GCCAACCGAACGGTTAAGGCT--CAATCCCTGTGGTATGCCATCATTGAGGCGCAAGTGG 10933429 Query 104916 AGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 104975 | ||||| | || |||||||| | ||| ||||| || ||| ||||| || || ||| Sbjct 10933428 AAACTGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAGCAACCAGCAGA 10933369 Query 104976 ATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 105035 || | || |||||| | ||| | || || |||||| | |||| | | | Sbjct 10933368 ATGTTGGCACCATCAAGTGCAGCAACTTGTGCACGGAAATCGTTGAATACTCCGCGCCGG 10933309 Query 105036 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 105095 |||||| ||||| || ||| | ||||| || || ||| || || ||| || ||| Sbjct 10933308 ATGAGATAGCTGTCTGCAACTTGGCATCCATTGCCCTCAACATGTTTGTCACACCGGAG- 10933250 Query 105096 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAA 105155 ||||| | ||||| | || ||| | ||||| || || | || |||| ||| |||| Sbjct 10933249 --AAGACGTATGATTTCAAGAAGCTCAAGGAAGTCACCAAGATAGTTACCAGAAATCTAA 10933192 Query 105156 ACAGAGTTATTGATAGAAATTTTTACCCCGTTG--AGACTGCTCGTAAATCTAATATGAG 105213 ||| | ||||||| || | ||| ||| ||| ||| || | || || ||| |||| Sbjct 10933191 ACAAGATAATTGATATCAACTATTATCCC-TTGCCAGA-GGCAAGGAAGTCAAATTTGAG 10933134 Query 105214 ACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCA 105273 |||||||| | || | ||| ||||||| |||| || | || ||||| || Sbjct 10933133 GCACCGTCCCGTGGGCATAGGTATTCAGGGATTCGCTGACGCCTTGATTCTCATGCGATT 10933074 Query 105274 CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCA 105333 | | | ||| || ||||| | ||| || ||||| || ||||| || | Sbjct 10933073 CCCGTATGAAAGTGAAGAAGCCGGTCTGTTGAATCAGCAGATATTCGAAACCATTTACTA 10933014 Query 105334 CGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393 | || | || || || | || |||| || || || || || ||||||| ||| Sbjct 10933013 TGGAGCCTTGGAAGCCAGCTGTGAACTGGCCCAGACCGAAGGCCCTTACGAAACCTATGA 10932954 Query 105394 GGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGG--AAGGT-GAGACCA 105449 ||| || | | |||||| | | || | || ||||||| ||||| || | Sbjct 10932953 GGG-CAGCCCGGTGAGCAAGGGAATTTTGCAGTACGACATGTGGGACAAGGTCCCAACGA 10932895 Query 105450 AGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACA 105509 | ||| | |||||| | || ||||| ||||||| || | ||| | || ||| Sbjct 10932894 ACCTT---TGGGACTGGCAGAAACTGAAGGAGTCCATCAAGAAGCACGGTGTCCGCAACT 10932838 Query 105510 GTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 105569 || || | ||||||||||| || || || || || ||||| |||| || ||||||| Sbjct 10932837 CCCTGCTGGTTGCTCCAATGCCCACTGCATCTACAGCTCAAATAATGGGCAACAATGAAT 10932778 Query 105570 GCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGA 105629 ||| || ||||| || |||||||| || || || || | || |||||| | Sbjct 10932777 CCTTCGAGCCCTATACCACGAACATATACACCAGGCGAGTTCTGTCCGGCGAGTTTCAGG 10932718 Query 105630 TTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGA 105689 | |||||| | ||| | || ||||| | |||| | | | ||| | | || |||| Sbjct 10932717 TGGTCAACCATCATTTGTTGCGCGACCTAACAGAGCTGGACTTGTGGGACGACGACATGA 10932658 Query 105690 AGGATCTCATGGT-GAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAA 105748 || | | || | ||| || || || || ||||| |||| || || || | Sbjct 10932657 AGAACCAGATCATATCCAGCAGG-GGCTCAATCCAAAACATTGAGGCCATCCCCCAGAGG 10932599 Query 105749 ATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGCC 105808 || | ||||| || || ||||||||| | ||| ||| | |||||| Sbjct 10932598 GTTCGCGATCTGTACAAGACGGTGTGGGAAATCTCAGTTAAGTCCACGATTAAAATGGCC 10932539 Query 105809 GCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTCTTCAT---GGAAAGT 105865 || || |||||| ||||| ||||| ||||| | || ||||| | | || Sbjct 10932538 GCCGACCGTGGTGCGTTCATAGATCAGAGTCAGTCGTTCAA--CATTCATGTGGCAGAGC 10932481 Query 105866 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACG 105925 ||||| ||| || || | || || ||| | ||| ||||| ||||| ||||| Sbjct 10932480 CCAACTATG-GAAAACTGACCTCCATACACTTTTACTCCTGGAAAGCTGGTCTTAAAACC 10932422 Query 105926 GGGATGTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCAGTCTTGAACCA 105985 || ||||| || || || | ||| || ||| | |||||||||| | ||||| | Sbjct 10932421 GGAATGTACTATCTGCGCACAAAGCCAGCTGCGAATGCCATTCAGTTCA-CCGTGAACAA 10932363 Query 105986 GAA 105988 ||| Sbjct 10932362 GAA 10932360 >seq5122 Length=22589142 Score = 100 bits (110), Expect = 3e-16 Identities = 118/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-C 94862 ||||| || |||| ||||| || ||||| ||||||||| || ||| ||| | Sbjct 17925524 GAGCGTATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCGGCAGCTT-TGCATC 17925582 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 |||| ||||| |||||||| ||||| ||||| || || |||||||||||||||||| Sbjct 17925583 CATTTTCTGGCTTAAGAAGCGCGGTCTAATGCCTGGACTGACCTTCTCCAACGAGCTTAT 17925642 Query 94923 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959 |||||| |||||||| | ||| || ||||| ||| Sbjct 17925643 CTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTG 17925679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583223442145760