Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5124 199 4e-46 seq5122 104 3e-17 >seq5124 Length=26641161 Score = 199 bits (220), Expect = 4e-46 Identities = 504/759 (66%), Gaps = 12/759 (2%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 ||||||| |||||| || || |||| ||||| || || | |||||| |||||| Sbjct 10933281 GATGCCAAGTTGCAGACAGCTATCTCATCCGGCGCGGAGTATTCAACGATTTCCGTGCAC 10933340 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || || ||||||||||||| | |||| ||||||||||||| ||| || |||||| Sbjct 10933341 AAGTTGCTGCACTTGATGGTGCCAACATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCC 10933400 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 ||| || ||||||||| | || || || || || || | | | | | ||| | | Sbjct 10933401 TTGAAGAGCATGTACGGATTTCCAGTTTCCACTTGCGCCTCAATGATGGCATACCACAGG 10933460 Query 79237 TCCCGGGCCCGGACAACCTTC--TTGTACCGACCCTGTGCGACGTACGTCCGGTACAACT 79294 | ||| || | ||| ||| ||||||| | |||| || |||| || Sbjct 10933461 GATTGAGCCTTAAC--CGTTCGGTTGGCTCGACCCTCTTGCTCGTATTTCTCATACAGCT 10933518 Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | ||| | || || | ||||| | ||||| ||||| | ||| |||||||| || Sbjct 10933519 TTTCGAATTCATCGCCCCACACATCTTGGAGGCCAGGGCATTTGTGGGGGCACATGAGCG 10933578 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 ||| || ||| ||| || || ||||||||| || || |||||||| || | Sbjct 10933579 ACCAATCACCGTTGGCCTCCACGCGCTTCATGAAGAGATCGGGTATCCACAGAGCGTAAA 10933638 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 | || |||||| || |||| || | |||| ||| || ||||| || || | Sbjct 10933639 ACAGATCGCGGGCGCGATTCTCTTCCTTGCCCGTGTTTTTCTTTAGTTCGAGGAACTCAA 10933698 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 || || | |||||| |||||||| || ||||| || | ||| ||||||||||| | Sbjct 10933699 AGACATCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCTC 10933758 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 |||||| || || || ||| |||||||| || | ||||||||| || | || | | Sbjct 10933759 CCTGGTCCACATAACGCGCCACATTGTTGAAGACCCTGAGCATGGGAACCAACCCATTG- 10933817 Query 79595 CGACG--CCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGA-GCA-GTGG 79650 |||| ||||| || ||| || || || | || |||||| | | ||| || | Sbjct 10933818 -GACGTTCCGTTTGTGCCGCAAATCGAGGTGCCCTTTGCACGAATG--CAATGCACGTTG 10933874 Query 79651 ATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATG 79710 | ||| ||||| || | |||||||||| ||||||| || | | || | ||| Sbjct 10933875 AGTCCAATGCCACCAGCAGACTTGGAGATCATGGCGCACTGCTCCACAGACTTAAAAATG 10933934 Query 79711 CCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTC 79770 |||||||| |||||| | |||| | | ||||| || ||||| ||| ||| ||| Sbjct 10933935 CCCTCGATTGAGTCGGCAGTCATGGTCAGAAGGAAACACGACGACAGCTGCGGGCGGTTT 10933994 Query 79771 GTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809 || | || || || || |||| || ||||| ||| Sbjct 10933995 GTGGCAGCAGCAAACAGCGTGGGCGATGCATGCGTAAAG 10934033 Score = 116 bits (128), Expect = 4e-21 Identities = 347/531 (65%), Gaps = 6/531 (1%) Strand=Plus/Minus Query 19421 GTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAA 19480 || || |||||| | ||||||||||| ||| | || || ||||||| |||||||| Sbjct 10933807 GTTCCCATGCTCAGGGTCTTCAACAATGTGGCGCGTTATGTGGACCAGGGAGGCGGCAAG 10933748 Query 19481 CGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTC 19540 || || | || ||||| ||||| ||||| |||||| |||| ||| | || |||||| Sbjct 10933747 CGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTCCTC 10933688 Query 19541 GAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTG 19600 ||||| ||| ||| | || |||| ||| ||||| || || || || Sbjct 10933687 GAACTAAAGAAAAACACGGGCAAGGAAGAGAATCGCGCCCGCGATCTGTTTTACGCTCTG 10933628 Query 19601 TGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGC 19660 ||||| || || || |||||| || || ||| ||| || ||| || |||||| Sbjct 10933627 TGGATACCCGATCTCTTCATGAAGCGCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGC 10933568 Query 19661 CCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACCGG 19720 || ||| ||||||||||||| | || || | ||||| | ||| | || |||| | Sbjct 10933567 CCCCACAAATGCCCTGGCCTCCAAGATGTGTGGGGCGATGAATTCGAAAAGCTGTATGAG 10933508 Query 19721 ACTTACGTAGC-CCAGGGCCGGTTCAA--GAAGGTGGTCCGGGCCCGGGACGTCTGGGAC 19777 | |||| ||| |||| || ||| ||| ||| ||| | | | ||| | Sbjct 10933507 AAATACG-AGCAAGAGGGTCGAGCCAACCGAA--CGGTTAAGGCTCAATCCCTGTGGTAT 10933451 Query 19778 CGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCG 19837 | || | | || || || || || | ||||||||| || ||||||||| Sbjct 10933450 GCCATCATTGAGGCGCAAGTGGAAACTGGAAATCCGTACATGCTCTTCAAGGACGCTTGC 10933391 Query 19838 AACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAA 19897 ||| ||| || ||| |||| | ||| | ||||||| |||| |||| || ||| Sbjct 10933390 AACAGGAAGAGCAACCAGCAGAATGTTGGCACCATCAAGTGCAGCAACTTGTGCACGGAA 10933331 Query 19898 ATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 ||| | || ||| |||||| |||| || || || || |||| ||| Sbjct 10933330 ATCGTTGAATACTCCGCGCCGGATGAGATAGCTGTCTGCAACTTGGCATCC 10933280 >seq5122 Length=22589142 Score = 104 bits (114), Expect = 3e-17 Identities = 515/804 (64%), Gaps = 21/804 (3%) Strand=Plus/Plus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| ||||||||||| | || | || ||||| | || ||| || || Sbjct 17925155 TCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACTGGCACCGACTG 17925214 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 || ||||||||| ||||||||| | || ||||| |||||||| || ||||| Sbjct 17925215 AAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCTTTCTTCGCCGCCTCCGATGGC 17925274 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGG 59792 || || | || ||| | | | ||| |||| || ||| | | ||||| || Sbjct 17925275 ATCGTAAACGAGAATCTGGTGGAGCGCTTCAGTCAGGAGGTGCAGGTCACGGAGGCACGC 17925334 Query 59793 TCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCAT 59851 | ||||||| | ||| ||| || ||| | ||||| |||| |||| | | Sbjct 17925335 TGCTTCTACGGCTTCCAGATCGC-CATGGAGAACGTGCACTCGGAGATGTACAGTGTGCT 17925393 Query 59852 GATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT--CTGTTCCGTGCCATAGAG 59909 |||||| | | || ||||||| | || || || |||||| || || || Sbjct 17925394 GATCGACACTTACATCCGGGATCCGAACCAGC--GCGAGTACCTGTTCAACGCTATCGAA 17925451 Query 59910 ACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCTGGAG-- 59967 ||| || || || || | || ||||| |||||| || ||||| |||| | Sbjct 17925452 ACGATGCCGGCTGTAAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATC--TCCTCCAAGT 17925509 Query 59968 CATC--ATTT-GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTG 60024 | | |||| | | ||| |||| || ||||| |||||| || ||||||||| | Sbjct 17925510 CTGCCAATTTCGGGGAGCGTATCATCGCCTTTGCCGCCGTGGAGGGCATCTTCTTCAGCG 17925569 Query 60025 GCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCT 60084 || || | ||||||||||| || ||||| || || ||||| || |||| |||| Sbjct 17925570 GCAGCTTTGCATCCATTTTCTGGCTTAAGAAGCGCGGTCTAATGCCTGGACTGACCTTCT 17925629 Query 60085 CCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATT 60144 |||||||||| || || || ||||||||| | || || ||||| ||| | | | | Sbjct 17925630 CCAACGAGCTTATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGCTGATGT-TC 17925688 Query 60145 CA-CACCTATTGGAAAAATGCCCTTCCA--AGGATATTCACAAGATTGTTCAGTGGGCTT 60201 || ||||| || | | ||| || || || | ||| | || ||| Sbjct 17925689 CAGCACCTGGTGCAGCGA--CCCAAGCACGAGCGCATCATCGAGA-TCATCCGTGACGCG 17925745 Query 60202 GTGAAG-TGGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGAC 60260 ||| | | ||| |||||| |||| || || || || || | || || ||| | Sbjct 17925746 GTGGCGATTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTTAATTTAATCGGCATGAAT 17925805 Query 60261 GCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGA 60320 || ||| | |||||||| |||| || |||||||| | | | |||| || Sbjct 17925806 TGTGACCTGATGTCCCAGTACATAGAGTTCGTTGCGGACCGTTTGCTTGTGGAGTTGGGC 17925865 Query 60321 GAAGGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAA 60380 | || || ||| | || ||||| ||| ||| ||||||| |||||| |||| Sbjct 17925866 GTTGGGAAGATCTACAACACCAAGAACCCCTTCAACTTCATGGAGATGATCTCGCTGGAT 17925925 Query 60381 GGGAAGACCAACTTCTTTGAGAAG 60404 || ||||||||||| ||||||||| Sbjct 17925926 GGAAAGACCAACTTTTTTGAGAAG 17925949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548489666986560