Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5124 201 1e-46 seq5122 143 3e-29 >seq5124 Length=26641161 Score = 201 bits (222), Expect = 1e-46 Identities = 469/702 (67%), Gaps = 8/702 (1%) Strand=Plus/Minus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 ||||||||||| || |||| || ||||| |||| || || | ||| ||| ||||| Sbjct 10934035 TACTTTACGCATGCATCGCCCACGCTGTTTGCTGCTGCCACAAACCGCCCGCAGCTGTCG 10933976 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 || ||||| || | |||| | ||||| ||||| ||||| | || | | || Sbjct 10933975 TCGTGTTTCCTTCTGACCATGACTGCCGACTCAATCGAGGGCATTTTTAAGTCTGTGGAG 10933916 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGC-TCGAACGTCC 53447 |||| ||| |||||||||| | ||||| || || || || ||| | | | | | Sbjct 10933915 CAGTGCGCCATGATCTCCAAGTCTGCTGGTGGCATTGGACTCAACGTGCATTGCA--TTC 10933858 Query 53448 GTGCGAACGGCACACCAATCAAGGGGACGAACGG--CGTCGCCGATGGAATCGTGCCTAT 53505 |||| || ||||| | || || || ||||| |||| | |||| | || || || Sbjct 10933857 GTGCAAAGGGCACCTCGATTTGCGGCACAAACGGAACGTC--CAATGGGTTGGTTCCCAT 10933800 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 |||| | ||||||||||| ||| || || || ||||||| || || ||||| || Sbjct 10933799 GCTCAGGGTCTTCAACAATGTGGCGCGTTATGTGGACCAGGGAGGCGGCAAGCGTCCCGG 10933740 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 | || ||||| ||||| ||||| |||||| | || | | ||||| ||||| || Sbjct 10933739 TGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGATGTCTTTGAGTTCCTCGAACTAAA 10933680 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCC 53685 || ||| | ||||||| ||| ||| || |||||| ||||||||||| || Sbjct 10933679 GAAAAACACGGGCAAGGAAGAGAATCGCGCCCGCGATCTGTTTTACGCTCTGTGGATACC 10933620 Query 53686 GGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGA 53745 || ||||||||| | |||||| ||| || |||| || |||||||| || | Sbjct 10933619 CGATCTCTTCATGAAGCGCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAA 10933560 Query 53746 GTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGC 53805 ||||| |||||||| | ||| | || || || || | || ||||| || |||| Sbjct 10933559 ATGCCCTGGCCTCCAAGATGTGTGGGGCGATGAATTCGAAAAGCTGTATGAGAAATACGA 10933500 Query 53806 AGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAA 53865 |||| || ||| | ||| ||||| | | ||| |||| ||| | | Sbjct 10933499 GCAAGAGGGTCGAGCCAACCGAACGGTTAAGGCTCAATCCCTGTGGTATGCCATCATTGA 10933440 Query 53866 GAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAG 53925 | || ||||| || |||| ||||||||| || |||||| | |||| |||||| Sbjct 10933439 GGCGCAAGTGGAAACTGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAGAG 10933380 Query 53926 CAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 ||||||| |||| | ||| |||||| | |||||||| || Sbjct 10933379 CAACCAGCAGAATGTTGGCACCATCAAGTGCAGCAACTTGTG 10933338 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||||||||| || || |||||||| || || || || ||||| || ||||||||| Sbjct 10932844 CGCAACTCCCTGCTGGTTGCTCCAATGCCCACTGCATCTACAGCTCAAATAATGGGCAAC 10932785 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTAC 55579 || || | |||||||| || || || ||||| ||| Sbjct 10932784 AATGAATCCTTCGAGCCCTATACCACGAACATATAC 10932749 >seq5122 Length=22589142 Score = 143 bits (158), Expect = 3e-29 Identities = 523/804 (65%), Gaps = 25/804 (3%) Strand=Plus/Minus Query 74477 CTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATCCAGTCGAAAGGGTT 74536 ||| ||||||||||||||||| || |||| |||||| ||||||| ||| ||| ||||| Sbjct 17925949 CTTCTCAAAAAAGTTGGTCTTTCCATCCAGCGAGATCATCTCCATGAAGTTGAAGGGGTT 17925890 Query 74537 CTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGGCGATCCGCCACAAA 74593 ||| | ||| || |||| | || |||| | | | || ||||| || || Sbjct 17925889 CTTGGTGTTGTAGAT---CTTCCCAACGCCCAACTCCACAAGCAAACGGTCCGCAACGAA 17925833 Query 74594 TTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGCACGGCAGTGCCTC 74653 | |||||||| | ||| | || ||||||||| | || ||||| || || Sbjct 17925832 CTCTATGTACTGGGACATCAGGTCACAATTCATGCCGATTAAATTAACGGGCAGGGCATC 17925773 Query 74654 GGTGATAAACTCACTCTCCACCTCGCAAGCCCATT--GGACAATCTTGTGAATGTCTTTG 74711 ||||| ||||| ||| | |||| | | | | ||| |||| | ||| | | Sbjct 17925772 GGTGAGGAACTCCTGCTCAA--TCGCCACCGCGTCACGGATGATCTCGATGATGCGCTCG 17925715 Query 74712 -GAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACTCCTGATGCGAGCC 74770 | || | | | | |||||| | | | | ||||||||| || ||| |||| Sbjct 17925714 TGCTTGGGTCGCTGCAC-CAGGTGCTGGAACATCAGCACGGCAAAGTCGCAGTGCAAGCC 17925656 Query 74771 TTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTT 74830 || || | || | || || || || | || |||||||| || || |||||||| Sbjct 17925655 CTCGTCGCGAGAGATAAGCTCGTTGGAGAAGGTCAGTCCAGGCATTAGACCGCGCTTCTT 17925596 Query 74831 CAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || |||| ||| || |||||||||||||| || || |||||||| Sbjct 17925595 AAGCCAGAAAATGGATGCAAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAAGGC 17925536 Query 74891 GACAAGGCGTTGCGCGAACGGTGCA---TCGGAAGTCATCCAAGTCTGAGCCCATTCAGC 74947 || | || | | |||| ||| | ||| | ||||| | | | ||||| || || Sbjct 17925535 GATGATACGCTCCCCGAAATTGGCAGACTTGGAGGAGATCCAGGACAGGGCCCAGTCTGC 17925476 Query 74948 TTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGG--CTTGCCTTCTCTTCG 75005 || || || || || || | || ||||| || | ||| ||| || || | |||| Sbjct 17925475 CTTGCGCTTTACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCGCGCTGG-TTCG 17925417 Query 75006 GGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTG 75065 | |||| || | |||| |||| | |||| ||||||| || | ||| || Sbjct 17925416 G-ATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAGTGCACGTTCTCCATG 17925358 Query 75066 AACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAA 75122 ||| |||| | ||||||| | || ||||| | | ||| || |||| |||| Sbjct 17925357 G-CGATCTGGAAGCCGTAGAAGCAGCGTGCCTCCGTGACCTGCACCTCCTGACTGAAGCG 17925299 Query 75123 TTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATT 75182 || | | |||||| | |||||||| || ||||||||||| |||||||| || Sbjct 17925298 CTCCA--CCAGATTCTCGTTTACGATGCCATCGGAGGCGGCGAAGAAAGCCAGCACGTGC 17925241 Query 75183 TTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGTCCCCCGCCAAA 75242 ||| || |||||||| ||||| | ||| || ||| || | |||||| | |||| Sbjct 17925240 GAGATGAAATGGCGCTCGTCGTCCTTCAGTCGGTGCCAGTCAGTAAGGTCCTTGGACAAA 17925181 Query 75243 TCAATCTCCTCGACCGTCCAGAAA 75266 || | ||||||||| ||||||||| Sbjct 17925180 TCCACCTCCTCGACGGTCCAGAAA 17925157 Score = 107 bits (118), Expect = 2e-18 Identities = 278/421 (66%), Gaps = 2/421 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||||||||||||||| || || || | || | |||||| | || || | || || Sbjct 4847188 CCAGTTCCGATACCCTCGGCTCCGTTTACCAATACCATCGGTATGATGGGGAGATACCAC 4847129 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 | |||||| | || | || |||||| ||| | | | || || ||| ||| Sbjct 4847128 TGAGGCTCGATCTTTTGGCCATCGTCCACCTGGTAGTCCAAAAGCGGATCGTCCAATGGA 4847069 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | | | ||| ||| | || | | |||||||||||||||| ||| ||| Sbjct 4847068 TGGTAGATGAGTCGCGTCAAAGGAGACATTAATGTGAAAATGTAACGAGCGCTGGCACAG 4847009 Query 117332 TCCTTGCCACCAG-CAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 || || || || | |||| || ||||| ||||| || | ||||| | || || | ||| Sbjct 4847008 TCTTTACCTCCCGTCAAG-CGGGTACCAAATTGACCGCGTGGCTCAAGCAGATTGATGTT 4846950 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 |||||| |||||||| || || |||| || || || || || ||| |||| || Sbjct 4846949 GTTGGCACCCACAAAATTCTGGGCCAGATTCACGATTGTCATCTGCAGGGATACCTCTCC 4846890 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 ||||| || |||| | ||| ||||| | || | ||||| || ||||||| || Sbjct 4846889 GTGGTGGTAGGCCGACATCTCTGCCACCGATCCGGATAGCTGGGCTACCTTCACCTCACG 4846830 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | | ||| |||| | ||| | | ||||| || ||||||| ||||| | ||||| Sbjct 4846829 CTTGTCGTTTCTCTTAAAGCAAGTGAACATCACTTTCCGCTGACCCGGCTTTAAGCCATC 4846770 Query 117571 C 117571 | Sbjct 4846769 C 4846769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547180950815200