Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5124 205 8e-48 >seq5124 Length=26641161 Score = 205 bits (226), Expect = 8e-48 Identities = 432/640 (68%), Gaps = 7/640 (1%) Strand=Plus/Plus Query 29825 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29884 ||||| |||| |||||||||||| || || || ||||| ||||||||| || Sbjct 3014249 TTTATGTTCAGCTTGGGAAAGGGTCGCGGTGTCCGCTTCAGCTGCTCCTTCAGCGGCTCG 3014308 Query 29885 ACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGC 29944 || | | |||||||||||| | ||| |||| | |||||||||| || ||||| | || Sbjct 3014309 ACATGGTTCAGGTAGACGTGCGTGTCGCCCATGGTGTGGACAAAGTCGCCCGGCTTCAGA 3014368 Query 29945 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 30004 || || || || || |||||||| ||||| || | |||| |||||| || |||||||| Sbjct 3014369 CCTGTCACATGGGCGATCATGTAGGTGAGCAGGGCGTAGGAGGCGATATTGAAGGGTACG 3014428 Query 30005 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGC----T 30060 || || |||||||| | ||||||||||||||| ||||| ||||| ||| ||| Sbjct 3014429 CCCAGGCCCATGTCGGCACTCCTCTGGTAGAGCTGGCACGATAGCTCACCG-CGCGTGGA 3014487 Query 30061 CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGG 30120 ||| ||||||| || ||| ||||| || || |||| || || || Sbjct 3014488 GACGAAAAACTGTGCCAGACAGTGACACGGTGGCAGGACCATCTTTGGCATATCAACAGG 3014547 Query 30121 GTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGC 30180 ||||| || ||| ||||||||||| ||| || || ||| |||| ||| | | Sbjct 3014548 ATTCCAAGCCGACAAGATGATGCGCCGATCTGAGGGATTATTCTTGATAGTGTCAATCAC 3014607 Query 30181 GTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTG 30239 |||||||||| | ||| | || |||||| | | || || | |||||| | Sbjct 3014608 CCGACGCAGCTGATCGATTCCCTTGCCGCTGTAGTCGTCGTCGCAGGT-GGCGTACTCCG 3014666 Query 30240 CTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCT 30299 | ||||| || | ||||||||| ||||| ||||| ||||| || || | | | | Sbjct 3014667 CCCCGAAGTGTCGCCACTGGAAGCCGTAGACCGGGCCCAGATCGCCAACGGAACGCTCCG 3014726 Query 30300 CGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCT 30359 || ||| |||||| || |||||| | ||| |||||||||| | || || Sbjct 3014727 TTAACCCCAGGCTGTCCAGGAACTCTCTGCTGCTGTTCCCGTCCCAGATGTGCACGTTCT 3014786 Query 30360 TCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGA 30419 || | ||| |||| || || || |||||||||||||||||||| | | Sbjct 3014787 TCGCCTGCAGCAACTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCTA 3014846 Query 30420 CGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 | || | || || | |||||| || || || ||||| Sbjct 3014847 CTGCGCGGAAGAACACACGCTTGGTGGTCAGCAGTGGAAA 3014886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406285026423408