Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5124 159 3e-34 >seq5124 Length=26641161 Score = 159 bits (176), Expect = 3e-34 Identities = 419/636 (66%), Gaps = 5/636 (1%) Strand=Plus/Plus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 || || |||| ||| || ||||| || || | |||||| | ||| |||||| Sbjct 3014252 ATGTTCAGCTTGGGAAAGGGTCGCGGTGTCCGCTTCAGCTGCTCCTTCAGCGGCTCGACA 3014311 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCC 6613 ||||||||||||| |||| || |||| || || || | || || || || || Sbjct 3014312 TGGTTCAGGTAGACGTGCGTGTCGCCCATGGTGTGGACAAAGTCGCCCGGCTTCAGACCT 3014371 Query 6614 ACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCT 6673 ||||| ||||||||||| |||||||| ||||| || || ||||| || || || Sbjct 3014372 GTCACATGGGCGATCATGTAGGTGAGCAGGGCGTAGGAGGCGATATTGAAGGGTACGCCC 3014431 Query 6674 AACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG---ACG 6730 | |||||||| | | || ||||||||||| || ||||| || || | ||| Sbjct 3014432 AGGCCCATGTCGGCACTCCTCTGGTAGAGCTGGCACGATAGCTCACCGCGCGTGGAGACG 3014491 Query 6731 TAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTC 6790 | || || || ||| ||||| || || ||||| || | ||| || ||| Sbjct 3014492 AAAAACTGTGCCAGACAGTGACACGGTGGCAGGACCATCTTTGGCATATCAACAGGATTC 3014551 Query 6791 CACGCGCACATCACGATCCTTCTGTCATCAGGG-TTCCGCTTCAAGGTGTCGATCACGTA 6849 || || ||| | ||| | | || | |||| || ||| | ||||| ||||| Sbjct 3014552 CAAGCCGACAAGATGATGCGCCGATC-TGAGGGATTATTCTTGATAGTGTCAATCACCCG 3014610 Query 6850 CTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCC 6909 ||||||| || ||||| || ||||| | |||| ||||||||||| Sbjct 3014611 ACGCAGCTGATCGATTCCCTTGCCGCTGTAGTCGTCGTCGCAGGTGGCGTACTCCGCCCC 3014670 Query 6910 AAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA 6969 ||||||| ||||||||| |||||||||||||||| ||||| | || | || Sbjct 3014671 GAAGTGTCGCCACTGGAAGCCGTAGACCGGGCCCAGATCGCCAACGGAACGCTCCGTTAA 3014730 Query 6970 CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGA 7029 |||| | ||||||| || |||| | || |||||||||| | ||| | | Sbjct 3014731 CCCCAGGCTGTCCAGGAACTCTCTGCTGCTGTTCCCGTCCCAGATGTGCACGTTCTTCGC 3014790 Query 7030 CGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCC 7089 | ||| ||||| || ||| ||| |||||||||||||||||||||| | || | Sbjct 3014791 CTGCAGCAACTTGGCGTCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCTACTGC 3014850 Query 7090 CTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 || ||||||| || || |||||||| ||||| Sbjct 3014851 GCGGAAGAACACACGCTTGGTGGTCAGCAGTGGAAA 3014886 Score = 159 bits (176), Expect = 3e-34 Identities = 419/636 (66%), Gaps = 5/636 (1%) Strand=Plus/Minus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 ||||| |||||||| || || ||||||| || | || | |||||||||||||||| Sbjct 3014886 TTTCCACTGCTGACCACCAAGCGTGTGTTCTTCCGCGCAGTAGCCGAGGAGCTGCTGTGG 3014827 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 |||||| ||| ||| || ||||| ||| | | | ||| | ||||||||| Sbjct 3014826 TTCGTGGCGGGCAAGACGGACGCCAAGTTGCTGCAGGCGAAGAACGTGCACATCTGGGAC 3014767 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGAC 34399 | || | |||| || ||||||| | |||||| | || | ||||| Sbjct 3014766 GGGAACAGCAGCAGAGAGTTCCTGGACAGCCTGGGGTTAACGGAGCGTTCCGTTGGCGAT 3014707 Query 34400 TTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAA 34459 |||||||||||||||| ||||||||| ||||||| ||||||||||| |||| Sbjct 3014706 CTGGGCCCGGTCTACGGCTTCCAGTGGCGACACTTCGGGGCGGAGTACGCCACCTGCGAC 3014647 Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 | ||||| || ||||| || ||||||| ||||| ||||| | ||| Sbjct 3014646 GACGACTACAGCGGCAAGGGAATCGATCAGCTGCGTCGGGTGATTGACACTATCAAGAAT 3014587 Query 34520 AA-CCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGAT 34578 || |||| | || | | ||| | ||| || ||||| || ||| | || ||| Sbjct 3014586 AATCCCTCA-GATCGGCGCATCATCTTGTCGGCTTGGAATCCTGTTGATATGCCAAAGAT 3014528 Query 34579 GGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT---CGCGAATGGGGAGCTGTC 34635 || || || ||||| ||| || || || | ||| | || || ||||| || Sbjct 3014527 GGTCCTGCCACCGTGTCACTGTCTGGCACAGTTTTTCGTCTCCACGCGCGGTGAGCTATC 3014468 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 ||||||||||| || | | |||||||| | || || || ||||| || || Sbjct 3014467 GTGCCAGCTCTACCAGAGGAGTGCCGACATGGGCCTGGGCGTACCCTTCAATATCGCCTC 3014408 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGT 34755 ||||| |||||||| ||||||||||| ||||| || || || || || | || Sbjct 3014407 CTACGCCCTGCTCACCTACATGATCGCCCATGTGACAGGTCTGAAGCCGGGCGACTTTGT 3014348 Query 34756 GCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCT 34815 || || |||| || |||| ||||||||||||| |||||| ||| | ||||| Sbjct 3014347 CCACACCATGGGCGACACGCACGTCTACCTGAACCATGTCGAGCCGCTGAAGGAGCAGCT 3014288 Query 34816 GCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 | | || || ||||| || ||| |||| || || Sbjct 3014287 GAAGCGGACACCGCGACCCTTTCCCAAGCTGAACAT 3014252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448233688793280