Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq5121 93.3 3e-14 seq5123 91.5 1e-13 seq1295 91.5 1e-13 >seq5121 Length=18748788 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || |||| |||| ||||| | ||||||| Sbjct 15143181 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGAC 15143122 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| ||| | || |||||| ||||| ||||||| ||| Sbjct 15143121 TACAACATCCAGAAGGAGTCCACCCTTCACTTGGTTCTGCGTCTGCGTGGTGGC 15143068 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || |||| |||| ||||| | ||||||| Sbjct 15142725 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGAC 15142666 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| ||| | || ||||| ||||| ||||||| ||| Sbjct 15142665 TACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 15142612 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || |||| |||| ||||| | ||||||| Sbjct 15142953 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGAC 15142894 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| ||| | || ||||| ||||| ||||||| ||| Sbjct 15142893 TACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 15142840 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || |||| |||| ||||| | ||||||| Sbjct 15143409 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGAC 15143350 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| ||| | || ||||| ||||| ||||||| ||| Sbjct 15143349 TACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 15143296 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || |||| |||| ||||| | ||||||| Sbjct 15143637 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGAC 15143578 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| ||| | || ||||| ||||| ||||||| ||| Sbjct 15143577 TACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 15143524 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || |||| |||| ||||| | ||||||| Sbjct 15143865 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGAC 15143806 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| ||| | || ||||| ||||| ||||||| ||| Sbjct 15143805 TACAACATCCAGAAGGAGTCCACCCTTCACTTGGTCCTGCGTCTGCGTGGTGGC 15143752 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || | || |||| |||| | ||||||| Sbjct 15142497 GATCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTAGAGGACGGTCGCACCCTGTCCGAC 15142438 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| ||| | || |||||| ||||| ||||||| || Sbjct 15142437 TACAACATCCAGAAGGAGTCCACCCTTCACTTGGTTCTGCGTCTGCGTGGTGG 15142385 >seq5123 Length=25762168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | ||||| ||||| || ||| |||| |||| ||||| |||||||||| Sbjct 6598625 GATCAGCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGAT 6598566 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 6598565 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGAGG 6598513 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | ||||| ||||| || ||| |||| |||| ||||| |||||||||| Sbjct 6599537 GATCAGCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGAT 6599478 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 6599477 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 6599425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | ||||| ||||| || ||| |||| |||| ||||| |||||||||| Sbjct 6600221 GATCAGCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGAT 6600162 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 6600161 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 6600109 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | ||||| ||||| ||||| | || || | ||||| |||||||||| Sbjct 6598397 GATCAGCAGCGTCTGATTTTCGCCGGCAAACAGCTCGAGGATGGACGCACCTTGTCCGAT 6598338 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| ||||||||| ||||| | ||| | || || || Sbjct 6598337 TACAACATCCAGAAGGAGTCCACTTTGCACTTGGTGCTCCGTCTCCGCGGAGG 6598285 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | ||||| ||||| || ||| |||| |||| ||||| | |||||||| Sbjct 6599081 GATCAGCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGAT 6599022 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 6599021 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 6598969 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || |||||||| || || |||| |||| ||||| | |||||||| Sbjct 6599993 GATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGAT 6599934 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 6599933 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 6599881 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | ||||| || || || ||| |||| |||| ||||| | |||||||| Sbjct 6600449 GATCAGCAGCGTCTGATTTTCGCTGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGAT 6600390 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 6600389 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 6600337 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || |||||||| || || |||| |||| ||||| | |||||||| Sbjct 6600905 GATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGAT 6600846 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 6600845 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 6600793 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | || |||||||| || || |||| |||| ||||| | |||||||| Sbjct 6601133 GATCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGCACCCTGTCCGAT 6601074 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 6601073 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 6601021 >seq1295 Length=1233 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | ||||| ||||| || ||| |||| |||| ||||| |||||||||| Sbjct 260 GATCAGCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGAT 201 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 200 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 148 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | ||||| ||||| || ||| |||| |||| ||||| |||||||||| Sbjct 487 GATCAGCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGAT 428 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 427 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGAGG 375 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | ||||| ||||| || ||| |||| |||| ||||| | |||||||| Sbjct 943 GATCAGCAGCGTCTGATTTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGAT 884 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 883 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 831 Score = 82.4 bits (90), Expect = 5e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || | ||||| || || || ||| |||| |||| ||||| | |||||||| Sbjct 1171 GATCAGCAGCGTCTGATTTTCGCTGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGAT 1112 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || ||| || | || |||||| | ||| ||||||| || Sbjct 1111 TACAACATCCAGAAGGAGTCGACCCTTCACTTGGTTCTCCGTCTGCGTGGTGG 1059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355840176837948