Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20erecta_20[refseq_20GCF_5F000005135.1_202006-07-12] 5,124 sequences; 152,712,140 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq5123 93.3 4e-14 seq5124 87.8 2e-12 >seq5123 Length=25762168 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || || ||||||| || || ||| |||| || Sbjct 6600811 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 6600870 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || ||||||||||| || | ||| | | ||| || || | Sbjct 6600871 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCTTGG 6600930 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| || | | | | |||||| | |||||| |||| ||||| | || Sbjct 6600931 ATTTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCACCTCCAAAGTGATGGTCTTG 6600990 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||||||||| Sbjct 6600991 CCAGTCAGGGTCTTCACGAAGATTTGCAT 6601019 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || || ||||||| || || ||| |||| || Sbjct 6601039 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 6601098 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || ||||||||||| || | || | | ||| || ||| Sbjct 6601099 AGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTATCCTGA 6601158 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | || | | ||||| | |||||| |||| ||||| | ||| Sbjct 6601159 ATCTTGGCCTTCACATTCTCGATGGTATCCGAGGGCTCCACCTCCAAAGTGATTGTCTTT 6601218 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || |||| || || |||||||| ||||| || Sbjct 6601219 CCAGTCAAGGTCTTCACAAAGATCTGCATTTT 6601250 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || || ||||||| || || ||| |||| || Sbjct 6600355 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 6600414 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 || || ||||| || || || ||||||||||| || | ||| | | ||| || || | Sbjct 6600415 AGTTGCTTGCCAGCGAAAATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCTTGG 6600474 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| || | | | | |||||| | |||||| |||| ||||| | || Sbjct 6600475 ATTTTGGCCTTCACGTTTTCAATGGTATCGGAAGGCTCCACCTCCAAAGTGATGGTCTTG 6600534 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||||||||| Sbjct 6600535 CCAGTCAGGGTCTTCACGAAGATTTGCAT 6600563 >seq5124 Length=26641161 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || || ||| || || || || || |||| || || || | Sbjct 4301707 GCGGAGCACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGACC 4301648 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || ||||||||||| || | ||| | || ||| || Sbjct 4301647 GTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTT 4301588 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| || |||| || | | || || | |||||| |||| ||||| Sbjct 4301587 ATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGAT 4301528 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || ||||| || ||||||||||| Sbjct 4301527 GGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 4301492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429518775414212